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The map label for this gene is rbsC [H]

Identifier: 148260142

GI number: 148260142

Start: 1267534

End: 1268520

Strand: Reverse

Name: rbsC [H]

Synonym: Acry_1138

Alternate gene names: 148260142

Gene position: 1268520-1267534 (Counterclockwise)

Preceding gene: 148260143

Following gene: 148260137

Centisome position: 37.43

GC content: 68.29

Gene sequence:

>987_bases
GTGACGGCGCCCGGCAAGACGGCGCGCATCGGGACAGGCCCGGCGCCGTTCGCCGCCCGCCTCGGGCCGGCGGCGCGGCG
CATGCTGCTGTCCTACCTGATCCTCCTTCTCGTTTATGGCTGCGCCGTCGCGGTGAATCCCGAATTCCTCGGCTGGGGCA
CCATGCGGCTGCAACTCGTGCAGGCGACGTTCATCGGCCTGATCGCGATCGGCGAGACCTTCGCCATCCTGATCGGCCAG
ATCGACCTTTCGGTGCCGTGGACCATCACCCTCTCGGCCATCCTGAGCACCAATCTCGCGGCGGTGTACGGCCATCAGTG
GATCGCCTTCGCCATCGTCATCGCGGTCGGCGTCGCGGTGGGGCTGCTGAACACGCTCGGCGTGTTCGTGCTGCGGGTGC
ATTCGCTGATCTGGACGCTCAGCGTCAACCTGCTGCTCCAGGGCATTGCCCTCGTCTACACGAACGCCGTCGCGCCGACG
ACCCATATCCCCGGCGCCGCCCGCACGCTCGCGCTCGGCAATGTGGGGTTCATGCCGGCGGCGTTCCTCGTCTGGATCGT
CTGCGGCGCGACTTCCATCCTGGCCCTGCGGGCGATGCCGTTCGGCCGCTCGATCTATGCGATCGGCAACAGCCCGGCGG
CGGCCCTGCTCTCCGGCGTGCCGATCGGACGGGTGACGGCACTGATCTTCGTCATCAGCGCGACATGCGCCGCCTTCGTC
GGGCTGCTGCTGAGCGGATATTCGTCGCAGGCCTATCTCGGCATGGGCAACGACTATCTGCTCCCGCCGATCGCCGCCGT
CGTCATCGGCGGCACCCGGCTGTCAGGCGGCGAGGGGGGCTATGCCGGCAGCATCGCCGGCGCGCTGACCGTCGTCCTGC
TGCAGGCGATCCTGGTGACGCTGAACATTTCCGAAGGCGCGCGCCAGCTCGTCTTCGGCGCCATCCTGCTGGCGCTGGCA
TTGCTGTTCCTCAAGCGGCGGTCATAG

Upstream 100 bases:

>100_bases
TCTGGCAGGATTGCATCGAAGGATTGATCCTCATGGTGGTTCTCGGCCTCGGCGGGCTGCGCCTGCTGCGCGGCGGCAAC
TGGCTCACGGTGCTGCGCCA

Downstream 100 bases:

>100_bases
TTGCCGCCGCCGCACTCCCATCGCGAGGCAGGGCGGGATTGAAGATCTAATGCCGGCAACCCAGCAGCGCCCGCGTCTTC
GGGTGAACCGGCTGCTCGAA

Product: inner-membrane translocator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 327

Protein sequence:

>328_residues
MTAPGKTARIGTGPAPFAARLGPAARRMLLSYLILLLVYGCAVAVNPEFLGWGTMRLQLVQATFIGLIAIGETFAILIGQ
IDLSVPWTITLSAILSTNLAAVYGHQWIAFAIVIAVGVAVGLLNTLGVFVLRVHSLIWTLSVNLLLQGIALVYTNAVAPT
THIPGAARTLALGNVGFMPAAFLVWIVCGATSILALRAMPFGRSIYAIGNSPAAALLSGVPIGRVTALIFVISATCAAFV
GLLLSGYSSQAYLGMGNDYLLPPIAAVVIGGTRLSGGEGGYAGSIAGALTVVLLQAILVTLNISEGARQLVFGAILLALA
LLFLKRRS

Sequences:

>Translated_328_residues
MTAPGKTARIGTGPAPFAARLGPAARRMLLSYLILLLVYGCAVAVNPEFLGWGTMRLQLVQATFIGLIAIGETFAILIGQ
IDLSVPWTITLSAILSTNLAAVYGHQWIAFAIVIAVGVAVGLLNTLGVFVLRVHSLIWTLSVNLLLQGIALVYTNAVAPT
THIPGAARTLALGNVGFMPAAFLVWIVCGATSILALRAMPFGRSIYAIGNSPAAALLSGVPIGRVTALIFVISATCAAFV
GLLLSGYSSQAYLGMGNDYLLPPIAAVVIGGTRLSGGEGGYAGSIAGALTVVLLQAILVTLNISEGARQLVFGAILLALA
LLFLKRRS
>Mature_327_residues
TAPGKTARIGTGPAPFAARLGPAARRMLLSYLILLLVYGCAVAVNPEFLGWGTMRLQLVQATFIGLIAIGETFAILIGQI
DLSVPWTITLSAILSTNLAAVYGHQWIAFAIVIAVGVAVGLLNTLGVFVLRVHSLIWTLSVNLLLQGIALVYTNAVAPTT
HIPGAARTLALGNVGFMPAAFLVWIVCGATSILALRAMPFGRSIYAIGNSPAAALLSGVPIGRVTALIFVISATCAAFVG
LLLSGYSSQAYLGMGNDYLLPPIAAVVIGGTRLSGGEGGYAGSIAGALTVVLLQAILVTLNISEGARQLVFGAILLALAL
LFLKRRS

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788896, Length=287, Percent_Identity=33.4494773519164, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI87082395, Length=264, Percent_Identity=30.3030303030303, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI145693152, Length=305, Percent_Identity=30.4918032786885, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI1790191, Length=303, Percent_Identity=29.3729372937294, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1787794, Length=279, Percent_Identity=27.9569892473118, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1789992, Length=131, Percent_Identity=40.4580152671756, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1790524, Length=293, Percent_Identity=27.9863481228669, Blast_Score=68, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33879; Mature: 33748

Theoretical pI: Translated: 10.30; Mature: 10.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAPGKTARIGTGPAPFAARLGPAARRMLLSYLILLLVYGCAVAVNPEFLGWGTMRLQLV
CCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHH
QATFIGLIAIGETFAILIGQIDLSVPWTITLSAILSTNLAAVYGHQWIAFAIVIAVGVAV
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
GLLNTLGVFVLRVHSLIWTLSVNLLLQGIALVYTNAVAPTTHIPGAARTLALGNVGFMPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHEEECCCCHHHH
AFLVWIVCGATSILALRAMPFGRSIYAIGNSPAAALLSGVPIGRVTALIFVISATCAAFV
HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHH
GLLLSGYSSQAYLGMGNDYLLPPIAAVVIGGTRLSGGEGGYAGSIAGALTVVLLQAILVT
HHHHHCCCCCEEEECCCCCCHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHH
LNISEGARQLVFGAILLALALLFLKRRS
HCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TAPGKTARIGTGPAPFAARLGPAARRMLLSYLILLLVYGCAVAVNPEFLGWGTMRLQLV
CCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHH
QATFIGLIAIGETFAILIGQIDLSVPWTITLSAILSTNLAAVYGHQWIAFAIVIAVGVAV
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
GLLNTLGVFVLRVHSLIWTLSVNLLLQGIALVYTNAVAPTTHIPGAARTLALGNVGFMPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHEEECCCCHHHH
AFLVWIVCGATSILALRAMPFGRSIYAIGNSPAAALLSGVPIGRVTALIFVISATCAAFV
HHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHH
GLLLSGYSSQAYLGMGNDYLLPPIAAVVIGGTRLSGGEGGYAGSIAGALTVVLLQAILVT
HHHHHCCCCCEEEECCCCCCHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHH
LNISEGARQLVFGAILLALALLFLKRRS
HCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]