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The map label for this gene is xthA [H]

Identifier: 148259957

GI number: 148259957

Start: 1051867

End: 1052637

Strand: Reverse

Name: xthA [H]

Synonym: Acry_0946

Alternate gene names: 148259957

Gene position: 1052637-1051867 (Counterclockwise)

Preceding gene: 148259971

Following gene: 148259955

Centisome position: 31.06

GC content: 68.09

Gene sequence:

>771_bases
GTGCGAATCGCGACCTGGAACGTCAATTCGGCACGCACGCGGGCCGGGCTGATCGCGGATTTTCTCAAGCGCGAGCAGCC
CGATCTGCTGCTGCTGCAGGAAATCAAGTGCGAGACTCAGCAGTTTCCGGCTGCCGCCTTCGAGGCGGAGGGATACCGCG
CCGAGGTCGTCGGGCAGAAGGCGTATAACGGCGTCGCGGTGCTCTCGCGCGGGGCGGTGACGGTGACCCACCGGCGCCTG
CCCGGCGAGGAGGAAGACGCGGCGGCGCGGTTCATCGAGATCGAGGCCGGCGGCCTGCTGGTTGGCAATCTCTACCTGCC
GAACGGCAATTCCGGCGGCGGCGACGGCTTCGCGGCCAAGCTCGACTGGATGGAGAAGCTGCGCCGGCATGCCGCCTCGC
TGCTGGAGCATGACCGCGACTTCATCCTGGCCGGTGATTACAATGTCTGCCCCACCGATGCGGATCTGGCCAAAGGCGCG
CTGCCGGCGGATGACGCGCTGGTGCGGCCGGAAAGCCGGGCGGCGTTCCGCGCGCTGATCTGGCTCGGCCTGACCGATGC
GCTGAGGGCGCTCCATCCGGATGAAACGCTCTATACGTTCTGGGACTATCAGGCCGGCGCCTGGCAGCGCGACCGGGGGC
TGCGAATCGACCATGCGTTGCTCTCGCCGCGCGTGGCGGAGCGGCTCGACACGGTGCGCGTCGCACGCGAGGAGCGGGAC
AAGCCGCAGCCTTCCGACCATGTGCCGGTGATTGTTTCGCTCCGCGATTAG

Upstream 100 bases:

>100_bases
TTCAAGGACACGCTGATGGGTGCCTATTTCGCCGTGGGCAACCCGAACGCGACCTCGTCCTGCGGCTGCGGCTCGTCCTT
CTCGGTCGACTGAGCGCGGC

Downstream 100 bases:

>100_bases
AGCACGTTCCGATCCATCCGGATCGGATGTCGTGCTCTATCTTGTTGATTATCAGAGCATCTTTATCCGATCAGATGACT
CCATCTGATCGGATGTTGCT

Product: exodeoxyribonuclease III Xth

Products: NA

Alternate protein names: EXO III; Exonuclease III [H]

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MRIATWNVNSARTRAGLIADFLKREQPDLLLLQEIKCETQQFPAAAFEAEGYRAEVVGQKAYNGVAVLSRGAVTVTHRRL
PGEEEDAAARFIEIEAGGLLVGNLYLPNGNSGGGDGFAAKLDWMEKLRRHAASLLEHDRDFILAGDYNVCPTDADLAKGA
LPADDALVRPESRAAFRALIWLGLTDALRALHPDETLYTFWDYQAGAWQRDRGLRIDHALLSPRVAERLDTVRVAREERD
KPQPSDHVPVIVSLRD

Sequences:

>Translated_256_residues
MRIATWNVNSARTRAGLIADFLKREQPDLLLLQEIKCETQQFPAAAFEAEGYRAEVVGQKAYNGVAVLSRGAVTVTHRRL
PGEEEDAAARFIEIEAGGLLVGNLYLPNGNSGGGDGFAAKLDWMEKLRRHAASLLEHDRDFILAGDYNVCPTDADLAKGA
LPADDALVRPESRAAFRALIWLGLTDALRALHPDETLYTFWDYQAGAWQRDRGLRIDHALLSPRVAERLDTVRVAREERD
KPQPSDHVPVIVSLRD
>Mature_256_residues
MRIATWNVNSARTRAGLIADFLKREQPDLLLLQEIKCETQQFPAAAFEAEGYRAEVVGQKAYNGVAVLSRGAVTVTHRRL
PGEEEDAAARFIEIEAGGLLVGNLYLPNGNSGGGDGFAAKLDWMEKLRRHAASLLEHDRDFILAGDYNVCPTDADLAKGA
LPADDALVRPESRAAFRALIWLGLTDALRALHPDETLYTFWDYQAGAWQRDRGLRIDHALLSPRVAERLDTVRVAREERD
KPQPSDHVPVIVSLRD

Specific function: Major apurinic-apyrimidinic endonuclease of E.coli. It removes the damaged DNA at cytosines and guanines by cleaving on the 3'-side of the AP site by a beta-elimination reaction [H]

COG id: COG0708

COG function: function code L; Exonuclease III

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DNA repair enzymes AP/ExoA family [H]

Homologues:

Organism=Homo sapiens, GI18375505, Length=267, Percent_Identity=30.3370786516854, Blast_Score=105, Evalue=4e-23,
Organism=Homo sapiens, GI18375503, Length=267, Percent_Identity=30.3370786516854, Blast_Score=105, Evalue=4e-23,
Organism=Homo sapiens, GI18375501, Length=267, Percent_Identity=30.3370786516854, Blast_Score=105, Evalue=4e-23,
Organism=Escherichia coli, GI1788046, Length=267, Percent_Identity=31.4606741573034, Blast_Score=127, Evalue=6e-31,
Organism=Caenorhabditis elegans, GI71989536, Length=262, Percent_Identity=29.7709923664122, Blast_Score=101, Evalue=4e-22,
Organism=Drosophila melanogaster, GI221330655, Length=257, Percent_Identity=31.1284046692607, Blast_Score=99, Evalue=3e-21,
Organism=Drosophila melanogaster, GI17136678, Length=257, Percent_Identity=31.1284046692607, Blast_Score=98, Evalue=5e-21,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000097
- InterPro:   IPR020847
- InterPro:   IPR020848
- InterPro:   IPR005135
- InterPro:   IPR004808 [H]

Pfam domain/function: PF03372 Exo_endo_phos [H]

EC number: =3.1.11.2 [H]

Molecular weight: Translated: 28392; Mature: 28392

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: PS00726 AP_NUCLEASE_F1_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIATWNVNSARTRAGLIADFLKREQPDLLLLQEIKCETQQFPAAAFEAEGYRAEVVGQK
CEEEEECCCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCCHHCCCCCCEEEEECCH
AYNGVAVLSRGAVTVTHRRLPGEEEDAAARFIEIEAGGLLVGNLYLPNGNSGGGDGFAAK
HCCCEEEEECCCEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCHHHH
LDWMEKLRRHAASLLEHDRDFILAGDYNVCPTDADLAKGALPADDALVRPESRAAFRALI
HHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHCCCCCCCCCEECCCHHHHHHHHH
WLGLTDALRALHPDETLYTFWDYQAGAWQRDRGLRIDHALLSPRVAERLDTVRVAREERD
HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEHHHHHCHHHHHHHHHHHHHHHHCC
KPQPSDHVPVIVSLRD
CCCCCCCCCEEEEECC
>Mature Secondary Structure
MRIATWNVNSARTRAGLIADFLKREQPDLLLLQEIKCETQQFPAAAFEAEGYRAEVVGQK
CEEEEECCCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHCCCHHCCCCCCEEEEECCH
AYNGVAVLSRGAVTVTHRRLPGEEEDAAARFIEIEAGGLLVGNLYLPNGNSGGGDGFAAK
HCCCEEEEECCCEEEEECCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCHHHH
LDWMEKLRRHAASLLEHDRDFILAGDYNVCPTDADLAKGALPADDALVRPESRAAFRALI
HHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHCCCCCCCCCEECCCHHHHHHHHH
WLGLTDALRALHPDETLYTFWDYQAGAWQRDRGLRIDHALLSPRVAERLDTVRVAREERD
HHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEHHHHHCHHHHHHHHHHHHHHHHCC
KPQPSDHVPVIVSLRD
CCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]