Definition Acidiphilium cryptum JF-5 chromosome, complete genome.
Accession NC_009484
Length 3,389,227

Click here to switch to the map view.

The map label for this gene is 148259822

Identifier: 148259822

GI number: 148259822

Start: 901806

End: 903236

Strand: Reverse

Name: 148259822

Synonym: Acry_0811

Alternate gene names: NA

Gene position: 903236-901806 (Counterclockwise)

Preceding gene: 148259823

Following gene: 148259821

Centisome position: 26.65

GC content: 45.0

Gene sequence:

>1431_bases
GTGATGCATAACTCCCAATCTGGATCCAAATGCTCAATCGCAACGCTCCCAATTCGTGAGATATCTGGACGAGTTTTGCC
AATAATTTGCTTCGATAGCGGACATATATTTGGTTCCGCATTGCATCATGCTCTTCAATTAGCAAGAACCCGATCGATAG
CAACGATCACAAATACAACACGTTCGATTGTTCTTTTGCTGGATTTTTATATAAGCACTGACGCGGACAACTTAGCATCT
GATGGTGATAGACAACGTTTTTTGACGACTTTTGCGCTAGCTTTACAGAACGGAACGAGCGTCCCAGACGGGATCGACCC
GACCGGACTCAATTGGAAGCCACGTTCACTTAGGGAATCACGACGCGTTTGGCAAAATTGTGAAAAATTTCTAATCGAAT
GTCGCCATTTCCCAAAAGGGCGCCACCCCATAGAAAACACTTGGCTGTTCACAACTGATTTGAGACTAAAAAAGTTGGCA
CGAACAACTTCGAAAAGTCTATCATTATTTGCTCATCTAAAATTTGGCGAACAAAATGGTATTGATTGGATACCGCGTTA
TTCTGGCATAGCAGCGAATCAGCGGCGGGCGATCGGATTTCCGACCGACAAAATTATGAAACTAATTACTACCACATTAG
AAAATAACAGAGCAAGTAAGGCTGCTCGGCTCCGAGATGCACTAGCATTTATACTCCTAGCGTATGGCGGGATACGATCT
AGTGAACTTTTTCATATATGGATCACGGATATAGTTTTGAACGACAGCGGTGCACGAGCATTTCTGCGCCATCCTTCGGA
TTACACAGTAAAACGCGCTGGAATGACAATAACTCGAAGATCGGAATTATCAGACCGATACAACCTCATACCACGACATA
TGATGGACCCATCTCATCCACTCCACGCTGGGTGGAAGGGAATAAGTTTTGACTATAATCACTCAGCGGTCGTGTATTGG
ATACCTCCAGTTATAGGTAAAATATTTGCAAATTTGCACATGTTGTGGGTATCCAAATTTCGACCCGTGGCTCCAGATCA
TCCGTATTATTTCACGTCGGTCGACATAGACGGCGATTTTGGCGGTCCTTGGACACGATCGGCGTTTCGCCGATCTTTCA
AAGCGGCCTGTGCGCGGATTGGACTGCAGCTCGATCAGGCTAAAGGCATTTCCCCTCATGGCATGCGTCATGCGTACGGT
ATTGCTGCGACAACGCTAGGTCTCAGTCAATCCGCTATCCAGCAGATGCTTCACCATCGTCATCCCCTAAGTCAAGAGGT
ATATAAGCAGCAGTCATTTGACCAAGTAACGTCTCAAATACAGTATGCGTACGAGAACTTAAAATCAGAAACGTTAACGA
CGCCAAATTTCGATAGTTTTTTTTGGAAATCAGACCCACAGCGCCTATTCAATACATGGAGGCATTCATGA

Upstream 100 bases:

>100_bases
GCTGTGGTTCGCACTGTTTAGCTGGAGAAATCACCTATGCTAAATGTAATGAAGACCCAACGTCAGTCCACACAACCTGT
TCTAAGTTATTTGTATTATC

Downstream 100 bases:

>100_bases
AACCAGCTGAACCCAACGATTTAGTAGCTTACGGATCCGAAAAAAGCACGATGTTTAGTGTTATCGATTCATCATATAAA
GGAACCGAATACAATTTATC

Product: phage integrase family protein

Products: NA

Alternate protein names: Phage Integrase; Integrase Family Protein; Site-Specific Recombinase; DNA Integration Protein; Phage Integrase Family Site Specific Recombinase

Number of amino acids: Translated: 476; Mature: 476

Protein sequence:

>476_residues
MMHNSQSGSKCSIATLPIREISGRVLPIICFDSGHIFGSALHHALQLARTRSIATITNTTRSIVLLLDFYISTDADNLAS
DGDRQRFLTTFALALQNGTSVPDGIDPTGLNWKPRSLRESRRVWQNCEKFLIECRHFPKGRHPIENTWLFTTDLRLKKLA
RTTSKSLSLFAHLKFGEQNGIDWIPRYSGIAANQRRAIGFPTDKIMKLITTTLENNRASKAARLRDALAFILLAYGGIRS
SELFHIWITDIVLNDSGARAFLRHPSDYTVKRAGMTITRRSELSDRYNLIPRHMMDPSHPLHAGWKGISFDYNHSAVVYW
IPPVIGKIFANLHMLWVSKFRPVAPDHPYYFTSVDIDGDFGGPWTRSAFRRSFKAACARIGLQLDQAKGISPHGMRHAYG
IAATTLGLSQSAIQQMLHHRHPLSQEVYKQQSFDQVTSQIQYAYENLKSETLTTPNFDSFFWKSDPQRLFNTWRHS

Sequences:

>Translated_476_residues
MMHNSQSGSKCSIATLPIREISGRVLPIICFDSGHIFGSALHHALQLARTRSIATITNTTRSIVLLLDFYISTDADNLAS
DGDRQRFLTTFALALQNGTSVPDGIDPTGLNWKPRSLRESRRVWQNCEKFLIECRHFPKGRHPIENTWLFTTDLRLKKLA
RTTSKSLSLFAHLKFGEQNGIDWIPRYSGIAANQRRAIGFPTDKIMKLITTTLENNRASKAARLRDALAFILLAYGGIRS
SELFHIWITDIVLNDSGARAFLRHPSDYTVKRAGMTITRRSELSDRYNLIPRHMMDPSHPLHAGWKGISFDYNHSAVVYW
IPPVIGKIFANLHMLWVSKFRPVAPDHPYYFTSVDIDGDFGGPWTRSAFRRSFKAACARIGLQLDQAKGISPHGMRHAYG
IAATTLGLSQSAIQQMLHHRHPLSQEVYKQQSFDQVTSQIQYAYENLKSETLTTPNFDSFFWKSDPQRLFNTWRHS
>Mature_476_residues
MMHNSQSGSKCSIATLPIREISGRVLPIICFDSGHIFGSALHHALQLARTRSIATITNTTRSIVLLLDFYISTDADNLAS
DGDRQRFLTTFALALQNGTSVPDGIDPTGLNWKPRSLRESRRVWQNCEKFLIECRHFPKGRHPIENTWLFTTDLRLKKLA
RTTSKSLSLFAHLKFGEQNGIDWIPRYSGIAANQRRAIGFPTDKIMKLITTTLENNRASKAARLRDALAFILLAYGGIRS
SELFHIWITDIVLNDSGARAFLRHPSDYTVKRAGMTITRRSELSDRYNLIPRHMMDPSHPLHAGWKGISFDYNHSAVVYW
IPPVIGKIFANLHMLWVSKFRPVAPDHPYYFTSVDIDGDFGGPWTRSAFRRSFKAACARIGLQLDQAKGISPHGMRHAYG
IAATTLGLSQSAIQQMLHHRHPLSQEVYKQQSFDQVTSQIQYAYENLKSETLTTPNFDSFFWKSDPQRLFNTWRHS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 54128; Mature: 54128

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMHNSQSGSKCSIATLPIREISGRVLPIICFDSGHIFGSALHHALQLARTRSIATITNTT
CCCCCCCCCEEEEEEEEHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEECCCH
RSIVLLLDFYISTDADNLASDGDRQRFLTTFALALQNGTSVPDGIDPTGLNWKPRSLRES
HHHHHEEEHHHCCCCHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
RRVWQNCEKFLIECRHFPKGRHPIENTWLFTTDLRLKKLARTTSKSLSLFAHLKFGEQNG
HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHEEEEEEEECCCCC
IDWIPRYSGIAANQRRAIGFPTDKIMKLITTTLENNRASKAARLRDALAFILLAYGGIRS
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC
SELFHIWITDIVLNDSGARAFLRHPSDYTVKRAGMTITRRSELSDRYNLIPRHMMDPSHP
CCEEEEEEEEEEECCCCCEEEHCCCCCCEEECCCCEEEEHHHHHHHHHCCHHHHCCCCCC
LHAGWKGISFDYNHSAVVYWIPPVIGKIFANLHMLWVSKFRPVAPDHPYYFTSVDIDGDF
CCCCCCCCEEECCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCC
GGPWTRSAFRRSFKAACARIGLQLDQAKGISPHGMRHAYGIAATTLGLSQSAIQQMLHHR
CCCCHHHHHHHHHHHHHHHHCCEEHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHC
HPLSQEVYKQQSFDQVTSQIQYAYENLKSETLTTPNFDSFFWKSDPQRLFNTWRHS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCC
>Mature Secondary Structure
MMHNSQSGSKCSIATLPIREISGRVLPIICFDSGHIFGSALHHALQLARTRSIATITNTT
CCCCCCCCCEEEEEEEEHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEECCCH
RSIVLLLDFYISTDADNLASDGDRQRFLTTFALALQNGTSVPDGIDPTGLNWKPRSLRES
HHHHHEEEHHHCCCCHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH
RRVWQNCEKFLIECRHFPKGRHPIENTWLFTTDLRLKKLARTTSKSLSLFAHLKFGEQNG
HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHEEEEEEEECCCCC
IDWIPRYSGIAANQRRAIGFPTDKIMKLITTTLENNRASKAARLRDALAFILLAYGGIRS
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC
SELFHIWITDIVLNDSGARAFLRHPSDYTVKRAGMTITRRSELSDRYNLIPRHMMDPSHP
CCEEEEEEEEEEECCCCCEEEHCCCCCCEEECCCCEEEEHHHHHHHHHCCHHHHCCCCCC
LHAGWKGISFDYNHSAVVYWIPPVIGKIFANLHMLWVSKFRPVAPDHPYYFTSVDIDGDF
CCCCCCCCEEECCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCC
GGPWTRSAFRRSFKAACARIGLQLDQAKGISPHGMRHAYGIAATTLGLSQSAIQQMLHHR
CCCCHHHHHHHHHHHHHHHHCCEEHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHC
HPLSQEVYKQQSFDQVTSQIQYAYENLKSETLTTPNFDSFFWKSDPQRLFNTWRHS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA