| Definition | Acidiphilium cryptum JF-5 chromosome, complete genome. |
|---|---|
| Accession | NC_009484 |
| Length | 3,389,227 |
Click here to switch to the map view.
The map label for this gene is 148259808
Identifier: 148259808
GI number: 148259808
Start: 886732
End: 887985
Strand: Reverse
Name: 148259808
Synonym: Acry_0797
Alternate gene names: NA
Gene position: 887985-886732 (Counterclockwise)
Preceding gene: 148259814
Following gene: 148259801
Centisome position: 26.2
GC content: 66.51
Gene sequence:
>1254_bases ATGGCAAGCAGCGACATCTTCACCCTCGGCCTCGGACTGACCCCACCCTGGCGCGTGGTCGACCAGCGGTTGGAAACCGA CTACCAGCCGCATGAGTTGCATCTGGCCGTCGCCGCCGACCCAGGCGCCCGCTTCCCCTGCCCAACCTGCGGCCGGCTGT GCAAACCGCACGACTGGAAGGAACTGAGCTGGCGGCACCTCAACTTCTTTCAGCACGCCTGCATCATCGAGGCCCGTGTG CCACGCACCGACTGTCCGGAGCACGGCGTACTCCGCATTGCTGTGCCTTGGGCACGTCCCGACAGCGGCTTCACGCTGTT GTTCGAGCAGGCCGCGCTGGCTCTGATGCGCGAGATGCCGGTTGCCGCTGCCGCGCGCATCATCGGCGTCACCGCCCAGC GGCTGTGGCGCATTCTGCGGTACTATGTCGGCCGGGCGATCGAGCGGCTCGATCTCAGCGGGGTCGAGGCGATCGCACTC GACGAAACCGCGGCCAAGCGAGGCCACAGCTACGTCACCGTGTTCATTGACCTCGATGCGGCCGAGCGCCCGGTGCTGTT CGTCACCCCCGGAAAGGGTAAGGAATGCATGACCGCCTTCCGGGCCTTCCTGGCGGAGCACGGCGGCGAGGCCCGCCGCA TCGCTGAGGTGGTGTGTGACATGTCGGCGGCCTTCCTTGCTGCTGCGGCGGAGAGCTTCCCGCAGGCCTCGGTCACCGTG GACTGGTTCCACGTCGTGCAGATCTTCACCACCGCGGTCGAGCAGGTGCGGCGCGCCGAGGCGCATCAGCACAACCTGCC CAAGGGGGTACGCTGGGCCACGTTGAAGCGACCGGAAAACCTGACCATGGCCCAGCGGCAGGCGCTCGACCAGTTGGAGA ACAGCGGCTTCGCCACAGCCGAAGCCTATCGCGCCAAGGAGATGCTGCGCTGGGTTCGCCTGGCCGCAACGCCACAGGCC GCGCGCTGGCGGCTGACCAACTTCCTCAACCACGTCACCGCCCGGCTGGACGATCCCGACCACCTGCTCGATCCTGTTCG ACAGGCCGTCGATACCGTACGGCGCAATGCCAAGCGGATCATTCGACGCTGGAAGTCAGGCCATTCCAATGCCCGCCTCG AAGCGCTCAATGGGCTGTTCCAGGCAGCCCGCGCTCGCGCCCGAGGCTATCGCAACACCGCTACCTTCGCGTGCATCATC TACCTGCTCGGCGCGCCCATCAACGCCATGCTCGACGTCTTCCATTCCACTTGA
Upstream 100 bases:
>100_bases GCAGACGGGCCGAGCAGCCGCATCCCGCAGTCCGATCGCGCATTGGCGCGGCATGCGGTGCCAGCCCGCACGGGACACTC TGATTGCGCGGAGCACCGCC
Downstream 100 bases:
>100_bases GACGTCGAAGAGCCTCTTTTTGGGGCGGAAGGTGACAAAATTATAGGGCTGGCCGTCCTTTTCCAGGCCAATGTAGAATT TGTTGTATTTGAGATTGAGG
Product: transposase, IS204/IS1001/IS1096/IS1165 family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 417; Mature: 416
Protein sequence:
>417_residues MASSDIFTLGLGLTPPWRVVDQRLETDYQPHELHLAVAADPGARFPCPTCGRLCKPHDWKELSWRHLNFFQHACIIEARV PRTDCPEHGVLRIAVPWARPDSGFTLLFEQAALALMREMPVAAAARIIGVTAQRLWRILRYYVGRAIERLDLSGVEAIAL DETAAKRGHSYVTVFIDLDAAERPVLFVTPGKGKECMTAFRAFLAEHGGEARRIAEVVCDMSAAFLAAAAESFPQASVTV DWFHVVQIFTTAVEQVRRAEAHQHNLPKGVRWATLKRPENLTMAQRQALDQLENSGFATAEAYRAKEMLRWVRLAATPQA ARWRLTNFLNHVTARLDDPDHLLDPVRQAVDTVRRNAKRIIRRWKSGHSNARLEALNGLFQAARARARGYRNTATFACII YLLGAPINAMLDVFHST
Sequences:
>Translated_417_residues MASSDIFTLGLGLTPPWRVVDQRLETDYQPHELHLAVAADPGARFPCPTCGRLCKPHDWKELSWRHLNFFQHACIIEARV PRTDCPEHGVLRIAVPWARPDSGFTLLFEQAALALMREMPVAAAARIIGVTAQRLWRILRYYVGRAIERLDLSGVEAIAL DETAAKRGHSYVTVFIDLDAAERPVLFVTPGKGKECMTAFRAFLAEHGGEARRIAEVVCDMSAAFLAAAAESFPQASVTV DWFHVVQIFTTAVEQVRRAEAHQHNLPKGVRWATLKRPENLTMAQRQALDQLENSGFATAEAYRAKEMLRWVRLAATPQA ARWRLTNFLNHVTARLDDPDHLLDPVRQAVDTVRRNAKRIIRRWKSGHSNARLEALNGLFQAARARARGYRNTATFACII YLLGAPINAMLDVFHST >Mature_416_residues ASSDIFTLGLGLTPPWRVVDQRLETDYQPHELHLAVAADPGARFPCPTCGRLCKPHDWKELSWRHLNFFQHACIIEARVP RTDCPEHGVLRIAVPWARPDSGFTLLFEQAALALMREMPVAAAARIIGVTAQRLWRILRYYVGRAIERLDLSGVEAIALD ETAAKRGHSYVTVFIDLDAAERPVLFVTPGKGKECMTAFRAFLAEHGGEARRIAEVVCDMSAAFLAAAAESFPQASVTVD WFHVVQIFTTAVEQVRRAEAHQHNLPKGVRWATLKRPENLTMAQRQALDQLENSGFATAEAYRAKEMLRWVRLAATPQAA RWRLTNFLNHVTARLDDPDHLLDPVRQAVDTVRRNAKRIIRRWKSGHSNARLEALNGLFQAARARARGYRNTATFACIIY LLGAPINAMLDVFHST
Specific function: Unknown
COG id: COG3464
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transposase 12 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002560 [H]
Pfam domain/function: PF01610 Transposase_12 [H]
EC number: NA
Molecular weight: Translated: 46852; Mature: 46721
Theoretical pI: Translated: 9.49; Mature: 9.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASSDIFTLGLGLTPPWRVVDQRLETDYQPHELHLAVAADPGARFPCPTCGRLCKPHDWK CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCHHCCCCCCCCH ELSWRHLNFFQHACIIEARVPRTDCPEHGVLRIAVPWARPDSGFTLLFEQAALALMREMP HHHHHHHHHHHHHHHEEECCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCC VAAAARIIGVTAQRLWRILRYYVGRAIERLDLSGVEAIALDETAAKRGHSYVTVFIDLDA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHCCCCEEEEEEECCC AERPVLFVTPGKGKECMTAFRAFLAEHGGEARRIAEVVCDMSAAFLAAAAESFPQASVTV CCCCEEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEH DWFHVVQIFTTAVEQVRRAEAHQHNLPKGVRWATLKRPENLTMAQRQALDQLENSGFATA HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCHH EAYRAKEMLRWVRLAATPQAARWRLTNFLNHVTARLDDPDHLLDPVRQAVDTVRRNAKRI HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH IRRWKSGHSNARLEALNGLFQAARARARGYRNTATFACIIYLLGAPINAMLDVFHST HHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHCC >Mature Secondary Structure ASSDIFTLGLGLTPPWRVVDQRLETDYQPHELHLAVAADPGARFPCPTCGRLCKPHDWK CCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCHHCCCCCCCCH ELSWRHLNFFQHACIIEARVPRTDCPEHGVLRIAVPWARPDSGFTLLFEQAALALMREMP HHHHHHHHHHHHHHHEEECCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCC VAAAARIIGVTAQRLWRILRYYVGRAIERLDLSGVEAIALDETAAKRGHSYVTVFIDLDA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHCCCCEEEEEEECCC AERPVLFVTPGKGKECMTAFRAFLAEHGGEARRIAEVVCDMSAAFLAAAAESFPQASVTV CCCCEEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEH DWFHVVQIFTTAVEQVRRAEAHQHNLPKGVRWATLKRPENLTMAQRQALDQLENSGFATA HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCHH EAYRAKEMLRWVRLAATPQAARWRLTNFLNHVTARLDDPDHLLDPVRQAVDTVRRNAKRI HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH IRRWKSGHSNARLEALNGLFQAARARARGYRNTATFACIIYLLGAPINAMLDVFHST HHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]