| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
Click here to switch to the map view.
The map label for this gene is 148243373
Identifier: 148243373
GI number: 148243373
Start: 1976435
End: 1977991
Strand: Direct
Name: 148243373
Synonym: SynRCC307_2274
Alternate gene names: NA
Gene position: 1976435-1977991 (Clockwise)
Preceding gene: 148243370
Following gene: 148243374
Centisome position: 88.83
GC content: 65.83
Gene sequence:
>1557_bases GTGCAGAAGCTTCTGCAGCAATCGACGGCAGCTGTGGTGGCGATCGCCATCAGCTTGGTGGGACTCGGTGCCGCTGGCTG GTGGTGGCTACAAAGTCAAAGCCCGCTGAAGCTGCAACACCAGAGCCTCACAACACCTGCCACCACACGCTTTCTGCCCA CCGACGCCAACCTGACGTTGATCCTGGAAGCCGACCCAGGGCGTCTGCCCGATTACGGGCGAGCGGTGGCCCCCATGCGT CAGCGCCGTCAGGCGGCCGATCAGTTGGAGCATCTGCGTGATGCCCTGTTCGCGGCTGCAGGGCTGGACTACGCCACCGA ATTGGCCGACTGGCTGGGTGATGAAAGTGCTCTGGCTGTGACAAGCGGAGACACCCCTGGCTGGGTGCTGGCCCTCTCCA GCCGCGACGACGATGGCGGCCGGCAATTCCTGCAGCGCTTCTGGCAATCGCGAAGCCTGGCGGGCGGGGGCCTCGACATC ACCCGCTACCGCGGCCTGGGAGTGATCAGCAGCCGCGGCCAACAAAGCCAGGGCCGGCCCTCTACCAGCAGCCCACAAGC GGAACACCCGCCCCTGGCTTCGGCCCTAATCAACGATCAACTGGTGCTGCTGGCCTCCAGCCGCGGCCAACTCGAGGATG CCCTCGATGCATCCCAGGAAGAGGCCAGGAACCTGGCGGGAGATCCGCTGCTGGCGCAATGGCTGGATGCAGGCCGCCAG GGCATTGCCCTGCTGCGGGGTGATCGCCAGGGCATCGAACAGCTGCTGAGGTTGCCAGCGAGCTGGAGCACCGATCAACC GATCGAGCAATTTGTCGGCAGCTTGCAACTTGATGGGGCTGGGGTTCGCCTGGCTGCTCAGCTGCAAACCAGCTCTGGGG CGTCGATCGCCCCACTGAGTCGCCGGGATCAGCAAGTGCTCGGCAACCTCAACCAGCCGGTCCAGCGGCTGAGCCTCAGC CGCCCCAGCGGCCCCCTGGCCCCGCTGTTCAACCTGACAGCCGCGAGCGACGACATCCTGCTGCCGGCTCTGCTGGAGGG CGAGCAGCCTCTACTGGAGGCGCAATTGCAGGACAGCAAAGCCTGGTTGATCGGCAGCAGCCAGAGCGCTCCACCAGCCG CAAGCCTCAATGAAGCGCTGGCCGAGCAAGGCTTTGACGCCAACAACCTCGATGGTTTGCAGGTGTGGAGCCATCTGACG GGCCAAAGCGATCGCCAGGGCCAACTGCAGGCCACCGTGGCCGGCGCCACCGGAGTGGCGCAGTCCAATCGCTGGTGGAG CAATAGCCTCGATGGCTTGCGCGCCCAGTTGCAGGGCCATGGCTCAGGCGGAGTGCCAAGCGAACTCTTGGAGCGGCTCA ATCCCTCCACTGGGGCCATTGCCCTATTGGGCGCCGATGGCCGCAGCACCGCCGAGTTGCTCAAACCCTGGCCCCTGTGG CGCGGTCTGCAGCTGCTCGCTGGCCAACGCCTGGGGCCTTCGCTCCAAGGGGCGGCCTTGGCGCTATCACAGGATCAGAG CAGCGCGGAGCTCGATGTGCTGCTGACGTTCCACTGA
Upstream 100 bases:
>100_bases GCGGCTGCGTGGAAGACATCCAGCGCTGCAACTCGGGCGCAGAGATCGACGTTGGTGCGTTTGCCATGGATGATTTGTAA ATCACGGCAGGGAGTGCTGG
Downstream 100 bases:
>100_bases CGATGGGCCCATGGCTCGAGAACTGCTGCTGATCCGCCACGGCATTGCTGTCGAGCGCGGCAGCACCGCCACCGATGAGG AACGCGCCCTTACCACCGAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 518; Mature: 518
Protein sequence:
>518_residues MQKLLQQSTAAVVAIAISLVGLGAAGWWWLQSQSPLKLQHQSLTTPATTRFLPTDANLTLILEADPGRLPDYGRAVAPMR QRRQAADQLEHLRDALFAAAGLDYATELADWLGDESALAVTSGDTPGWVLALSSRDDDGGRQFLQRFWQSRSLAGGGLDI TRYRGLGVISSRGQQSQGRPSTSSPQAEHPPLASALINDQLVLLASSRGQLEDALDASQEEARNLAGDPLLAQWLDAGRQ GIALLRGDRQGIEQLLRLPASWSTDQPIEQFVGSLQLDGAGVRLAAQLQTSSGASIAPLSRRDQQVLGNLNQPVQRLSLS RPSGPLAPLFNLTAASDDILLPALLEGEQPLLEAQLQDSKAWLIGSSQSAPPAASLNEALAEQGFDANNLDGLQVWSHLT GQSDRQGQLQATVAGATGVAQSNRWWSNSLDGLRAQLQGHGSGGVPSELLERLNPSTGAIALLGADGRSTAELLKPWPLW RGLQLLAGQRLGPSLQGAALALSQDQSSAELDVLLTFH
Sequences:
>Translated_518_residues MQKLLQQSTAAVVAIAISLVGLGAAGWWWLQSQSPLKLQHQSLTTPATTRFLPTDANLTLILEADPGRLPDYGRAVAPMR QRRQAADQLEHLRDALFAAAGLDYATELADWLGDESALAVTSGDTPGWVLALSSRDDDGGRQFLQRFWQSRSLAGGGLDI TRYRGLGVISSRGQQSQGRPSTSSPQAEHPPLASALINDQLVLLASSRGQLEDALDASQEEARNLAGDPLLAQWLDAGRQ GIALLRGDRQGIEQLLRLPASWSTDQPIEQFVGSLQLDGAGVRLAAQLQTSSGASIAPLSRRDQQVLGNLNQPVQRLSLS RPSGPLAPLFNLTAASDDILLPALLEGEQPLLEAQLQDSKAWLIGSSQSAPPAASLNEALAEQGFDANNLDGLQVWSHLT GQSDRQGQLQATVAGATGVAQSNRWWSNSLDGLRAQLQGHGSGGVPSELLERLNPSTGAIALLGADGRSTAELLKPWPLW RGLQLLAGQRLGPSLQGAALALSQDQSSAELDVLLTFH >Mature_518_residues MQKLLQQSTAAVVAIAISLVGLGAAGWWWLQSQSPLKLQHQSLTTPATTRFLPTDANLTLILEADPGRLPDYGRAVAPMR QRRQAADQLEHLRDALFAAAGLDYATELADWLGDESALAVTSGDTPGWVLALSSRDDDGGRQFLQRFWQSRSLAGGGLDI TRYRGLGVISSRGQQSQGRPSTSSPQAEHPPLASALINDQLVLLASSRGQLEDALDASQEEARNLAGDPLLAQWLDAGRQ GIALLRGDRQGIEQLLRLPASWSTDQPIEQFVGSLQLDGAGVRLAAQLQTSSGASIAPLSRRDQQVLGNLNQPVQRLSLS RPSGPLAPLFNLTAASDDILLPALLEGEQPLLEAQLQDSKAWLIGSSQSAPPAASLNEALAEQGFDANNLDGLQVWSHLT GQSDRQGQLQATVAGATGVAQSNRWWSNSLDGLRAQLQGHGSGGVPSELLERLNPSTGAIALLGADGRSTAELLKPWPLW RGLQLLAGQRLGPSLQGAALALSQDQSSAELDVLLTFH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55052; Mature: 55052
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 0.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 0.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQKLLQQSTAAVVAIAISLVGLGAAGWWWLQSQSPLKLQHQSLTTPATTRFLPTDANLTL CHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEHHHCCCCCCCEEEEECCCCEEE ILEADPGRLPDYGRAVAPMRQRRQAADQLEHLRDALFAAAGLDYATELADWLGDESALAV EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEE TSGDTPGWVLALSSRDDDGGRQFLQRFWQSRSLAGGGLDITRYRGLGVISSRGQQSQGRP ECCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEHCCCCCEECCCCCCCCCCC STSSPQAEHPPLASALINDQLVLLASSRGQLEDALDASQEEARNLAGDPLLAQWLDAGRQ CCCCCCCCCCCHHHHHHCCCEEEEECCCCCHHHHHCCCHHHHHHCCCCHHHHHHHHCCCC GIALLRGDRQGIEQLLRLPASWSTDQPIEQFVGSLQLDGAGVRLAAQLQTSSGASIAPLS CEEEEECCHHHHHHHHHCCCCCCCCCHHHHHHCCEEECCCCEEEEEEEECCCCCCCCCCC RRDQQVLGNLNQPVQRLSLSRPSGPLAPLFNLTAASDDILLPALLEGEQPLLEAQLQDSK HHHHHHHCCHHHHHHHHHCCCCCCCCCHHHCCCCCCCCEEEHHHHCCCCHHHHHHHCCCC AWLIGSSQSAPPAASLNEALAEQGFDANNLDGLQVWSHLTGQSDRQGQLQATVAGATGVA EEEEECCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCC QSNRWWSNSLDGLRAQLQGHGSGGVPSELLERLNPSTGAIALLGADGRSTAELLKPWPLW CCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCCCCCCEEEEEECCCCCHHHHHCCCCHH RGLQLLAGQRLGPSLQGAALALSQDQSSAELDVLLTFH HHHHHHHCCCCCCCCCCCEEEEECCCCCCCEEEEEEEC >Mature Secondary Structure MQKLLQQSTAAVVAIAISLVGLGAAGWWWLQSQSPLKLQHQSLTTPATTRFLPTDANLTL CHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEHHHCCCCCCCEEEEECCCCEEE ILEADPGRLPDYGRAVAPMRQRRQAADQLEHLRDALFAAAGLDYATELADWLGDESALAV EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEE TSGDTPGWVLALSSRDDDGGRQFLQRFWQSRSLAGGGLDITRYRGLGVISSRGQQSQGRP ECCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEHCCCCCEECCCCCCCCCCC STSSPQAEHPPLASALINDQLVLLASSRGQLEDALDASQEEARNLAGDPLLAQWLDAGRQ CCCCCCCCCCCHHHHHHCCCEEEEECCCCCHHHHHCCCHHHHHHCCCCHHHHHHHHCCCC GIALLRGDRQGIEQLLRLPASWSTDQPIEQFVGSLQLDGAGVRLAAQLQTSSGASIAPLS CEEEEECCHHHHHHHHHCCCCCCCCCHHHHHHCCEEECCCCEEEEEEEECCCCCCCCCCC RRDQQVLGNLNQPVQRLSLSRPSGPLAPLFNLTAASDDILLPALLEGEQPLLEAQLQDSK HHHHHHHCCHHHHHHHHHCCCCCCCCCHHHCCCCCCCCEEEHHHHCCCCHHHHHHHCCCC AWLIGSSQSAPPAASLNEALAEQGFDANNLDGLQVWSHLTGQSDRQGQLQATVAGATGVA EEEEECCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEECCCCCC QSNRWWSNSLDGLRAQLQGHGSGGVPSELLERLNPSTGAIALLGADGRSTAELLKPWPLW CCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCCCCCCEEEEEECCCCCHHHHHCCCCHH RGLQLLAGQRLGPSLQGAALALSQDQSSAELDVLLTFH HHHHHHHCCCCCCCCCCCEEEEECCCCCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA