Click here to switch to the map view.

The map label for this gene is perM [C]

Identifier: 148243365

GI number: 148243365

Start: 1970497

End: 1971567

Strand: Direct

Name: perM [C]

Synonym: SynRCC307_2266

Alternate gene names: 148243365

Gene position: 1970497-1971567 (Clockwise)

Preceding gene: 148243364

Following gene: 148243368

Centisome position: 88.57

GC content: 64.71

Gene sequence:

>1071_bases
ATGAACCTGCCGCGCTGGTTACGCCTGAGCCTGATCCTGCCCTTACTGGGGTTGAACCTGTTTGTGCTGCGCCAGGCGCT
GCTCCGCCTAGCGCCTTTTCCGGCTCTGTTCATCAGCGCGGCTCTGATCGCCTTCCTGCTGGATATTCCGCGCCGCTGGT
TGCAGCACCGGGGCGTGCCGAGGCCGCTGACGATGGTGCTGGTGCTGGGCGTCACCGTTGGGGTGGTGGTGCTCAGCGGC
CTGTGGCTGGTGCCGCGGCTGATTGAACAGCTCGGCGAACTGATCAACGCCGCCCCCGGCTGGCTGGAGCAAGCCCAAAA
CCAGCTCAATGTCTTGCAGGAGAAGGCCTTGGAGCGGGGCATCCCCACCGACCTCAGCCCACTCACCGACGATCTGCTCG
CCCGCAGCACGCGCCTGGCACGCAGCCTGAGTCAGCAGCTGCTGGGCCTACTCAGCGCCACCCTTGGCCTCACGGTGAAC
AGCATCATCGTGCTGGTCTTGGCGGTGTTCCTACTGCTCGGCGGCGAAACCATCTCTGCCGGTTTGGCGCGCTGGGTCCC
CGATGACTGGCGCGAGTTGGTGGTGGGCAGCTTGAACCGGACCTTCCGCGGCTATTTCGCCGGCCAAGTGCTGCTGGCCT
TGATTCTCAGCGGCCTGCAGGTGGTGGTGTTCACGCTGCTGCAGATTCCCTACGGGATTTTGTTTGCCCTGCTGATTGGC
TTCACAACGCTGATCCCCTACGCCAGCGCCCTGACGATCACCCTGATCAGCATCGTGTTGACCGTGGAAGATTTGCGCAC
GGGCCTGGAAGTGCTGGCAGCAGCGATCTCCGTGGGCCAGGTGGTGGATCAAGTGATCGCCCCGCGCTTGGTGGGCACGA
TCGTGGGGCTGCATCCAGCCTGGGTGCTGTTCAGCCTGCCGGTGGGCTCACGGCTGGGCGCGCTGCTGGGCTGCGGGCAA
CTGCTGGGCTTGCTGCTCGCGGTGCCGCTGGCGAGCGTGCTCAAGACCATCCTCGATGAGGTTTACATCAGGCTGCAGCC
TTCAGAACCCCCCGCTCCTCCAGCAGGTTGA

Upstream 100 bases:

>100_bases
GCGAGCAACTACACAACTACCGCCGAGGCCTGGCCGAGATGGTGACCGCCAAAGATGCCCGGCTTCAGGAGTTGGGCAGC
AGCAACTATCTGGCGCAGTG

Downstream 100 bases:

>100_bases
TCACAGCAGCCACACACTGCTCCAGGTTTTGGGCGCCAGTGTCAAGGCAAAGCTCGGGCTTCTCCGGCGCCTCGTAGGGG
CTGGAAATGCCGGTGAACTC

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 356

Protein sequence:

>356_residues
MNLPRWLRLSLILPLLGLNLFVLRQALLRLAPFPALFISAALIAFLLDIPRRWLQHRGVPRPLTMVLVLGVTVGVVVLSG
LWLVPRLIEQLGELINAAPGWLEQAQNQLNVLQEKALERGIPTDLSPLTDDLLARSTRLARSLSQQLLGLLSATLGLTVN
SIIVLVLAVFLLLGGETISAGLARWVPDDWRELVVGSLNRTFRGYFAGQVLLALILSGLQVVVFTLLQIPYGILFALLIG
FTTLIPYASALTITLISIVLTVEDLRTGLEVLAAAISVGQVVDQVIAPRLVGTIVGLHPAWVLFSLPVGSRLGALLGCGQ
LLGLLLAVPLASVLKTILDEVYIRLQPSEPPAPPAG

Sequences:

>Translated_356_residues
MNLPRWLRLSLILPLLGLNLFVLRQALLRLAPFPALFISAALIAFLLDIPRRWLQHRGVPRPLTMVLVLGVTVGVVVLSG
LWLVPRLIEQLGELINAAPGWLEQAQNQLNVLQEKALERGIPTDLSPLTDDLLARSTRLARSLSQQLLGLLSATLGLTVN
SIIVLVLAVFLLLGGETISAGLARWVPDDWRELVVGSLNRTFRGYFAGQVLLALILSGLQVVVFTLLQIPYGILFALLIG
FTTLIPYASALTITLISIVLTVEDLRTGLEVLAAAISVGQVVDQVIAPRLVGTIVGLHPAWVLFSLPVGSRLGALLGCGQ
LLGLLLAVPLASVLKTILDEVYIRLQPSEPPAPPAG
>Mature_356_residues
MNLPRWLRLSLILPLLGLNLFVLRQALLRLAPFPALFISAALIAFLLDIPRRWLQHRGVPRPLTMVLVLGVTVGVVVLSG
LWLVPRLIEQLGELINAAPGWLEQAQNQLNVLQEKALERGIPTDLSPLTDDLLARSTRLARSLSQQLLGLLSATLGLTVN
SIIVLVLAVFLLLGGETISAGLARWVPDDWRELVVGSLNRTFRGYFAGQVLLALILSGLQVVVFTLLQIPYGILFALLIG
FTTLIPYASALTITLISIVLTVEDLRTGLEVLAAAISVGQVVDQVIAPRLVGTIVGLHPAWVLFSLPVGSRLGALLGCGQ
LLGLLLAVPLASVLKTILDEVYIRLQPSEPPAPPAG

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1788838, Length=313, Percent_Identity=25.5591054313099, Blast_Score=76, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 38318; Mature: 38318

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLPRWLRLSLILPLLGLNLFVLRQALLRLAPFPALFISAALIAFLLDIPRRWLQHRGVP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
RPLTMVLVLGVTVGVVVLSGLWLVPRLIEQLGELINAAPGWLEQAQNQLNVLQEKALERG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
IPTDLSPLTDDLLARSTRLARSLSQQLLGLLSATLGLTVNSIIVLVLAVFLLLGGETISA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
GLARWVPDDWRELVVGSLNRTFRGYFAGQVLLALILSGLQVVVFTLLQIPYGILFALLIG
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FTTLIPYASALTITLISIVLTVEDLRTGLEVLAAAISVGQVVDQVIAPRLVGTIVGLHPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WVLFSLPVGSRLGALLGCGQLLGLLLAVPLASVLKTILDEVYIRLQPSEPPAPPAG
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MNLPRWLRLSLILPLLGLNLFVLRQALLRLAPFPALFISAALIAFLLDIPRRWLQHRGVP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
RPLTMVLVLGVTVGVVVLSGLWLVPRLIEQLGELINAAPGWLEQAQNQLNVLQEKALERG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
IPTDLSPLTDDLLARSTRLARSLSQQLLGLLSATLGLTVNSIIVLVLAVFLLLGGETISA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
GLARWVPDDWRELVVGSLNRTFRGYFAGQVLLALILSGLQVVVFTLLQIPYGILFALLIG
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FTTLIPYASALTITLISIVLTVEDLRTGLEVLAAAISVGQVVDQVIAPRLVGTIVGLHPA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WVLFSLPVGSRLGALLGCGQLLGLLLAVPLASVLKTILDEVYIRLQPSEPPAPPAG
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]