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The map label for this gene is ndh [H]

Identifier: 148243302

GI number: 148243302

Start: 1910802

End: 1912286

Strand: Direct

Name: ndh [H]

Synonym: SynRCC307_2203

Alternate gene names: 148243302

Gene position: 1910802-1912286 (Clockwise)

Preceding gene: 148243301

Following gene: 148243305

Centisome position: 85.88

GC content: 63.03

Gene sequence:

>1485_bases
ATGACTGCCACCCGTGAGCGTTTCTTTCTTGAACTCGAGCCTCCAATGGAGGAGCTGCGGGGCAAGCCCCATGTGGTGAT
CGTTGGTGGTGGCTTTGCCGGCATCAAGGCCTGCAAGGCCTTCAAGGGCGCTGATGTGCGCGTCACCCTGATCGACAAGC
GCAACTTCAACCTGTTCCAACCGCTGCTCTATCAAGTGGCAACTGGCCTGGTCTCCCGCGGCGATGTGGCCACCCCATTG
CGCCAATTGGTGGGGGCCCAGCGCAATGTTCAGGTGCTGCTTGGTGAAGTCAGCGAGATCCAAACCGAGGCCAAGCAGGT
CATCTTCAATGGCAAGGCCATGGCCTATGACCACCTGATCCTGGCCACCGGATCAGGCAGCAGCTTTTTTGGCCACGACG
ACTGGCGCGGCATTGCCCCGCCGATGAAGATCCTCGAGCACGCCGAAGAGATTCGCCGACGGCTGCTCATGGCCCTGGAG
CAAGCCGAGCAAACCCCCAACGGCGACGAGCGCGCGTTTCTGCAAACGGTTGTGGTGGTTGGCGGCGGTCCCACCGGCTG
CGAAATGGCCGGCGCCATCAACGAGCTGATGCGGCGCTCGATGGCCAAGGACTTCAACCAACTCGACCCAGGGGCCACAC
GGATCATGGTGGTGGACCCCGGCGACCGGCTGCTCAAGGCCATGCCGGAAGCCTGCTCTGCAGCTGCTGCCAAGGAATTG
CAAGCCATGGGTGTGGAGCTCTGCTTCCACAGCCGGGTTCAGTCGATCGTGCCCGGTGAAGTGCTGATCACCACCCCCGA
GGGTGAGCGCACAATCAAGGCCGCCAATGTGTTTTGGACTGCTGGTGTGCGCGCCTCGCATCTCGGCAAAAAACTGGCGG
AAGCCACTGGCTGTGAAGTGGACCGCGGCGGCCGAGTGATGGTGGAACCGGATTTCTCCATCCCCAATCACCCTGAAATC
CGGGTGGTGGGCGATCTCTGCAGCTACAAACACACCGCCGACGGCAAAGCCTTGCCGGGCATGGCCGGTCCAGCGGTGCA
AATGGGCGGCTGGGTTGCCAAAGACATTCGCGCCCAACTGGAGGGCCGCAGCCACAAACCCTTTGCCTGGTTTGACTTCG
GCAGCATGGCGGTGTTGGGCCGGCTCGGCGCTGTGGCCGACCTGCGCGGGATCAAGCTGGCGGGCCTGCCGGCCTGGGTT
CTGTGGGCCGTAGCCCACCTGGCCTTCATGCCCGATGAAGAGAATCGCCTCACCCTGCTGGTGAAATGGCTTTGGGCCAT
CCTCACCAGGCAACGGGGATCGCTGTTGCTGACCGGGATGCCCAGCCAGCACGTGGGGCTGGAAGGAGGTTCAGCCCCCT
TCCCCATGGGCCTGCACAGCGAACCGTCCATCGCCGAAATGGACGGGACCATGGGCAAGGCCATGGAGAACTTCCGCGAA
GCGGAAAACCCCCAAGCACCCGCCTCAGCTCAACCCAGCAGCTGA

Upstream 100 bases:

>100_bases
CCTGCTGCTCGAAGGCATCAAATCGAGCATTTAATCCCTGCTTCGCGGCCAATTTTGAACGGCGTTCATACCTTGTGGAA
GTTGATCGCTACAAGGGCCA

Downstream 100 bases:

>100_bases
GCTGGCCGGCTCACTGGCTGCCATCAGATAAAGCAGGGCCATGCGCACCGGAATCCCGTTGCGCACCTGCTCTTCTACTA
GCGAACGGCTCGGGTCATCG

Product: NADH dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 494; Mature: 493

Protein sequence:

>494_residues
MTATRERFFLELEPPMEELRGKPHVVIVGGGFAGIKACKAFKGADVRVTLIDKRNFNLFQPLLYQVATGLVSRGDVATPL
RQLVGAQRNVQVLLGEVSEIQTEAKQVIFNGKAMAYDHLILATGSGSSFFGHDDWRGIAPPMKILEHAEEIRRRLLMALE
QAEQTPNGDERAFLQTVVVVGGGPTGCEMAGAINELMRRSMAKDFNQLDPGATRIMVVDPGDRLLKAMPEACSAAAAKEL
QAMGVELCFHSRVQSIVPGEVLITTPEGERTIKAANVFWTAGVRASHLGKKLAEATGCEVDRGGRVMVEPDFSIPNHPEI
RVVGDLCSYKHTADGKALPGMAGPAVQMGGWVAKDIRAQLEGRSHKPFAWFDFGSMAVLGRLGAVADLRGIKLAGLPAWV
LWAVAHLAFMPDEENRLTLLVKWLWAILTRQRGSLLLTGMPSQHVGLEGGSAPFPMGLHSEPSIAEMDGTMGKAMENFRE
AENPQAPASAQPSS

Sequences:

>Translated_494_residues
MTATRERFFLELEPPMEELRGKPHVVIVGGGFAGIKACKAFKGADVRVTLIDKRNFNLFQPLLYQVATGLVSRGDVATPL
RQLVGAQRNVQVLLGEVSEIQTEAKQVIFNGKAMAYDHLILATGSGSSFFGHDDWRGIAPPMKILEHAEEIRRRLLMALE
QAEQTPNGDERAFLQTVVVVGGGPTGCEMAGAINELMRRSMAKDFNQLDPGATRIMVVDPGDRLLKAMPEACSAAAAKEL
QAMGVELCFHSRVQSIVPGEVLITTPEGERTIKAANVFWTAGVRASHLGKKLAEATGCEVDRGGRVMVEPDFSIPNHPEI
RVVGDLCSYKHTADGKALPGMAGPAVQMGGWVAKDIRAQLEGRSHKPFAWFDFGSMAVLGRLGAVADLRGIKLAGLPAWV
LWAVAHLAFMPDEENRLTLLVKWLWAILTRQRGSLLLTGMPSQHVGLEGGSAPFPMGLHSEPSIAEMDGTMGKAMENFRE
AENPQAPASAQPSS
>Mature_493_residues
TATRERFFLELEPPMEELRGKPHVVIVGGGFAGIKACKAFKGADVRVTLIDKRNFNLFQPLLYQVATGLVSRGDVATPLR
QLVGAQRNVQVLLGEVSEIQTEAKQVIFNGKAMAYDHLILATGSGSSFFGHDDWRGIAPPMKILEHAEEIRRRLLMALEQ
AEQTPNGDERAFLQTVVVVGGGPTGCEMAGAINELMRRSMAKDFNQLDPGATRIMVVDPGDRLLKAMPEACSAAAAKELQ
AMGVELCFHSRVQSIVPGEVLITTPEGERTIKAANVFWTAGVRASHLGKKLAEATGCEVDRGGRVMVEPDFSIPNHPEIR
VVGDLCSYKHTADGKALPGMAGPAVQMGGWVAKDIRAQLEGRSHKPFAWFDFGSMAVLGRLGAVADLRGIKLAGLPAWVL
WAVAHLAFMPDEENRLTLLVKWLWAILTRQRGSLLLTGMPSQHVGLEGGSAPFPMGLHSEPSIAEMDGTMGKAMENFREA
ENPQAPASAQPSS

Specific function: Transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone. Does not couple the redox reaction to proton translocation [H]

COG id: COG1252

COG function: function code C; NADH dehydrogenase, FAD-containing subunit

Gene ontology:

Cell location: Cell membrane [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NADH dehydrogenase family [H]

Homologues:

Organism=Escherichia coli, GI1787352, Length=362, Percent_Identity=29.2817679558011, Blast_Score=129, Evalue=4e-31,
Organism=Saccharomyces cerevisiae, GI6323515, Length=460, Percent_Identity=25.2173913043478, Blast_Score=95, Evalue=3e-20,
Organism=Saccharomyces cerevisiae, GI6320118, Length=446, Percent_Identity=24.4394618834081, Blast_Score=93, Evalue=9e-20,
Organism=Saccharomyces cerevisiae, GI6323794, Length=446, Percent_Identity=22.4215246636771, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013027
- InterPro:   IPR001327 [H]

Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2 [H]

EC number: =1.6.99.3 [H]

Molecular weight: Translated: 53397; Mature: 53266

Theoretical pI: Translated: 6.95; Mature: 6.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTATRERFFLELEPPMEELRGKPHVVIVGGGFAGIKACKAFKGADVRVTLIDKRNFNLFQ
CCCCCCEEEEEECCCHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEEEEECCCCCHHH
PLLYQVATGLVSRGDVATPLRQLVGAQRNVQVLLGEVSEIQTEAKQVIFNGKAMAYDHLI
HHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE
LATGSGSSFFGHDDWRGIAPPMKILEHAEEIRRRLLMALEQAEQTPNGDERAFLQTVVVV
EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEEEEE
GGGPTGCEMAGAINELMRRSMAKDFNQLDPGATRIMVVDPGDRLLKAMPEACSAAAAKEL
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
QAMGVELCFHSRVQSIVPGEVLITTPEGERTIKAANVFWTAGVRASHLGKKLAEATGCEV
HHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEEEEEEEECCCHHHHHHHHHHHHCCCCC
DRGGRVMVEPDFSIPNHPEIRVVGDLCSYKHTADGKALPGMAGPAVQMGGWVAKDIRAQL
CCCCEEEECCCCCCCCCCCEEEEEHHHCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHH
EGRSHKPFAWFDFGSMAVLGRLGAVADLRGIKLAGLPAWVLWAVAHLAFMPDEENRLTLL
CCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHCCCCCCCHHHHH
VKWLWAILTRQRGSLLLTGMPSQHVGLEGGSAPFPMGLHSEPSIAEMDGTMGKAMENFRE
HHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHH
AENPQAPASAQPSS
HCCCCCCCCCCCCC
>Mature Secondary Structure 
TATRERFFLELEPPMEELRGKPHVVIVGGGFAGIKACKAFKGADVRVTLIDKRNFNLFQ
CCCCCEEEEEECCCHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEEEEECCCCCHHH
PLLYQVATGLVSRGDVATPLRQLVGAQRNVQVLLGEVSEIQTEAKQVIFNGKAMAYDHLI
HHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE
LATGSGSSFFGHDDWRGIAPPMKILEHAEEIRRRLLMALEQAEQTPNGDERAFLQTVVVV
EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEEEEE
GGGPTGCEMAGAINELMRRSMAKDFNQLDPGATRIMVVDPGDRLLKAMPEACSAAAAKEL
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
QAMGVELCFHSRVQSIVPGEVLITTPEGERTIKAANVFWTAGVRASHLGKKLAEATGCEV
HHHHHHHHHHHHHHHCCCCCEEEECCCCCCEEEEEEEEEECCCHHHHHHHHHHHHCCCCC
DRGGRVMVEPDFSIPNHPEIRVVGDLCSYKHTADGKALPGMAGPAVQMGGWVAKDIRAQL
CCCCEEEECCCCCCCCCCCEEEEEHHHCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHH
EGRSHKPFAWFDFGSMAVLGRLGAVADLRGIKLAGLPAWVLWAVAHLAFMPDEENRLTLL
CCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHCCCCCCCHHHHH
VKWLWAILTRQRGSLLLTGMPSQHVGLEGGSAPFPMGLHSEPSIAEMDGTMGKAMENFRE
HHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHH
AENPQAPASAQPSS
HCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]