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The map label for this gene is dapL

Identifier: 148243278

GI number: 148243278

Start: 1889936

End: 1891162

Strand: Direct

Name: dapL

Synonym: SynRCC307_2179

Alternate gene names: 148243278

Gene position: 1889936-1891162 (Clockwise)

Preceding gene: 148243274

Following gene: 148243279

Centisome position: 84.94

GC content: 60.96

Gene sequence:

>1227_bases
ATGGCCCTCGTCAACGGCAATTACCTCAAGCTCAAAGCGGGTTACCTGTTTCCTGAAATTGGTCGCCGGGTGAAGGCCTT
CAGCGAAGCCAACCCCGACGCCGCCCTGATCCGCCTGGGCATTGGTGATGTCACCGAGCCCCTGCCGCAGGCTTGCCGGG
ACGCCATGAAAAACGCCATCGATGAGATGGGAACTCGCGAAGGCTTCCATGGCTATGGGCCGGAGCAGGGCTACGCCTGG
CTGCGCGAAGCGATTGCCAAACACGATTTCCAAAGCCGCGGCTGTGACATCAGCGCCGAGGAGATCTTTGTCTCCGACGG
CTCCAAATGCGATAGCAGCAACATCCTCGACATCCTTGGCGAGGGCAATCGCATCGCCGTAACCGATCCGGTCTATCCGG
TTTATGTCGACAGCAACGTGATGGCTGGCCGCACCGGTGATGCCAATGAGGGCGGGCAATACGGCGGCCTGAGCTACCTG
CCCATCACCGCTGCCAACGATTTCACCGCACCGCTACCCAGCACCCCGGTTGATCTGATCTATCTCTGTTTCCCCAACAA
CCCCACCGGAGCTGTCGCCAGCCGCGAGCAACTCAAGAGCTGGGTGGATTACGCCCTCGAGCACAAGGCTCTGATCCTGT
TCGATGCGGCCTATGAGGCCTTCATCCAAGATCCGGCCATCCCCCACTCGATCTTTGAAATTGAGGGGGCGCGCCAATGC
GCGATCGAATTCCGCTCCTTCTCCAAGAACGCCGGCTTTACAGGCACCCGCTGCGCACTCACCGTGGTGCCCAAGGGCCT
GATGGGCACCAGCGCCACGGGTGAGCAGGTGGAGCTCTGGGGCCTCTGGAACCGCCGCCAAAGCACCAAGTTCAATGGCG
TCAGCTACATCGTTCAGCGTGGGGCTGAAGCGGTGTACTCCGAGCAAGGCCAAGCCGAGGTCAAGGCGCTCATCAACTTC
TACATGGAGAACGCCGCGATCATTCGCAGGGAGCTTTCCGCCGCTGGGCTCACGATCTATGGCGGCGAGCATGCCCCCTA
CGTGTGGATCAAAACCCCCGAAGGCATGGATTCCTGGGGCTTCTTTGACCATCTGCTCAACAGGGCCAATGTGGTGGGAA
CACCCGGCAGTGGCTTTGGTGCCGCGGGTGAGGGCTACTTCCGCCTCTCCGCCTTCAACAGCCGCAGCAACGTGGATGAA
GCCATGCGCCGCATCCGCGCTCTTTAG

Upstream 100 bases:

>100_bases
CCGGCATTGACCAGCTCAGCGAAAGCGGTCATCGGCGCGGCAGCACTGCCTTGAGTATGGAGCTCCGCATAGGACAATCC
CGCCATCGCGCTACTCCCCT

Downstream 100 bases:

>100_bases
ATTGCCGTCGGTTCTGCGATCTGCCCCCGCCATGACGCACGCCAGTGAAACTCCGGTGAGCTCCCCTGGTGGGGGAGCCG
CCGTGATGGAGCGGCAGCCC

Product: L,L-diaminopimelate aminotransferase

Products: NA

Alternate protein names: DAP-AT; DAP-aminotransferase; LL-DAP-aminotransferase

Number of amino acids: Translated: 408; Mature: 407

Protein sequence:

>408_residues
MALVNGNYLKLKAGYLFPEIGRRVKAFSEANPDAALIRLGIGDVTEPLPQACRDAMKNAIDEMGTREGFHGYGPEQGYAW
LREAIAKHDFQSRGCDISAEEIFVSDGSKCDSSNILDILGEGNRIAVTDPVYPVYVDSNVMAGRTGDANEGGQYGGLSYL
PITAANDFTAPLPSTPVDLIYLCFPNNPTGAVASREQLKSWVDYALEHKALILFDAAYEAFIQDPAIPHSIFEIEGARQC
AIEFRSFSKNAGFTGTRCALTVVPKGLMGTSATGEQVELWGLWNRRQSTKFNGVSYIVQRGAEAVYSEQGQAEVKALINF
YMENAAIIRRELSAAGLTIYGGEHAPYVWIKTPEGMDSWGFFDHLLNRANVVGTPGSGFGAAGEGYFRLSAFNSRSNVDE
AMRRIRAL

Sequences:

>Translated_408_residues
MALVNGNYLKLKAGYLFPEIGRRVKAFSEANPDAALIRLGIGDVTEPLPQACRDAMKNAIDEMGTREGFHGYGPEQGYAW
LREAIAKHDFQSRGCDISAEEIFVSDGSKCDSSNILDILGEGNRIAVTDPVYPVYVDSNVMAGRTGDANEGGQYGGLSYL
PITAANDFTAPLPSTPVDLIYLCFPNNPTGAVASREQLKSWVDYALEHKALILFDAAYEAFIQDPAIPHSIFEIEGARQC
AIEFRSFSKNAGFTGTRCALTVVPKGLMGTSATGEQVELWGLWNRRQSTKFNGVSYIVQRGAEAVYSEQGQAEVKALINF
YMENAAIIRRELSAAGLTIYGGEHAPYVWIKTPEGMDSWGFFDHLLNRANVVGTPGSGFGAAGEGYFRLSAFNSRSNVDE
AMRRIRAL
>Mature_407_residues
ALVNGNYLKLKAGYLFPEIGRRVKAFSEANPDAALIRLGIGDVTEPLPQACRDAMKNAIDEMGTREGFHGYGPEQGYAWL
REAIAKHDFQSRGCDISAEEIFVSDGSKCDSSNILDILGEGNRIAVTDPVYPVYVDSNVMAGRTGDANEGGQYGGLSYLP
ITAANDFTAPLPSTPVDLIYLCFPNNPTGAVASREQLKSWVDYALEHKALILFDAAYEAFIQDPAIPHSIFEIEGARQCA
IEFRSFSKNAGFTGTRCALTVVPKGLMGTSATGEQVELWGLWNRRQSTKFNGVSYIVQRGAEAVYSEQGQAEVKALINFY
MENAAIIRRELSAAGLTIYGGEHAPYVWIKTPEGMDSWGFFDHLLNRANVVGTPGSGFGAAGEGYFRLSAFNSRSNVDEA
MRRIRAL

Specific function: Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL-diaminopimelate, a reaction that requires three enzymes in E.coli

COG id: COG0436

COG function: function code E; Aspartate/tyrosine/aromatic aminotransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family. LL-diaminopimelate aminotransferase subfamily

Homologues:

Organism=Escherichia coli, GI1788722, Length=354, Percent_Identity=27.4011299435028, Blast_Score=114, Evalue=8e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DAPAT_SYNR3 (A5GW23)

Other databases:

- EMBL:   CT978603
- RefSeq:   YP_001228435.1
- ProteinModelPortal:   A5GW23
- SMR:   A5GW23
- STRING:   A5GW23
- GeneID:   5156731
- GenomeReviews:   CT978603_GR
- KEGG:   syr:SynRCC307_2179
- eggNOG:   COG0436
- HOGENOM:   HBG645860
- OMA:   VDLIYLC
- ProtClustDB:   PRK07590
- HAMAP:   MF_01642
- InterPro:   IPR004839
- InterPro:   IPR019942
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- Gene3D:   G3DSA:3.40.640.10
- Gene3D:   G3DSA:3.90.1150.10
- TIGRFAMs:   TIGR03542

Pfam domain/function: PF00155 Aminotran_1_2; SSF53383 PyrdxlP-dep_Trfase_major

EC number: =2.6.1.83

Molecular weight: Translated: 44477; Mature: 44346

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: PS00105 AA_TRANSFER_CLASS_1

Important sites: BINDING 42-42 BINDING 72-72 BINDING 75-75 BINDING 109-109 BINDING 132-132 BINDING 187-187 BINDING 187-187 BINDING 215-215 BINDING 218-218 BINDING 246-246 BINDING 248-248 BINDING 257-257 BINDING 292-292 BINDING 388-388

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALVNGNYLKLKAGYLFPEIGRRVKAFSEANPDAALIRLGIGDVTEPLPQACRDAMKNAI
CEEECCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH
DEMGTREGFHGYGPEQGYAWLREAIAKHDFQSRGCDISAEEIFVSDGSKCDSSNILDILG
HHHCCCCCCCCCCCCHHHHHHHHHHHHCCHHHCCCCCCHHEEEECCCCCCCCCCCHHEEC
EGNRIAVTDPVYPVYVDSNVMAGRTGDANEGGQYGGLSYLPITAANDFTAPLPSTPVDLI
CCCEEEEECCCEEEEECCCEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEE
YLCFPNNPTGAVASREQLKSWVDYALEHKALILFDAAYEAFIQDPAIPHSIFEIEGARQC
EEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHCCCCCCCHHEEECCCHHH
AIEFRSFSKNAGFTGTRCALTVVPKGLMGTSATGEQVELWGLWNRRQSTKFNGVSYIVQR
HHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHH
GAEAVYSEQGQAEVKALINFYMENAAIIRRELSAAGLTIYGGEHAPYVWIKTPEGMDSWG
CHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCEEEEECCCCCCCHH
FFDHLLNRANVVGTPGSGFGAAGEGYFRLSAFNSRSNVDEAMRRIRAL
HHHHHHCCCCEECCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCC
>Mature Secondary Structure 
ALVNGNYLKLKAGYLFPEIGRRVKAFSEANPDAALIRLGIGDVTEPLPQACRDAMKNAI
EEECCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH
DEMGTREGFHGYGPEQGYAWLREAIAKHDFQSRGCDISAEEIFVSDGSKCDSSNILDILG
HHHCCCCCCCCCCCCHHHHHHHHHHHHCCHHHCCCCCCHHEEEECCCCCCCCCCCHHEEC
EGNRIAVTDPVYPVYVDSNVMAGRTGDANEGGQYGGLSYLPITAANDFTAPLPSTPVDLI
CCCEEEEECCCEEEEECCCEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEE
YLCFPNNPTGAVASREQLKSWVDYALEHKALILFDAAYEAFIQDPAIPHSIFEIEGARQC
EEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHCCCCCCCHHEEECCCHHH
AIEFRSFSKNAGFTGTRCALTVVPKGLMGTSATGEQVELWGLWNRRQSTKFNGVSYIVQR
HHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHH
GAEAVYSEQGQAEVKALINFYMENAAIIRRELSAAGLTIYGGEHAPYVWIKTPEGMDSWG
CHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCEEEEECCCCCCCHH
FFDHLLNRANVVGTPGSGFGAAGEGYFRLSAFNSRSNVDEAMRRIRAL
HHHHHHCCCCEECCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA