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The map label for this gene is secY [H]

Identifier: 148243233

GI number: 148243233

Start: 1841002

End: 1842321

Strand: Direct

Name: secY [H]

Synonym: SynRCC307_2134

Alternate gene names: 148243233

Gene position: 1841002-1842321 (Clockwise)

Preceding gene: 148243232

Following gene: 148243234

Centisome position: 82.74

GC content: 60.08

Gene sequence:

>1320_bases
ATGCTTGTCAGTCGGGGGCGCACCCCAAGCGCCGGCGAAGTCGTCACGCAACTGTTTCAAGCCAAAGGGCTCAGGGATCG
TGTTCTCACGACCCTGGGCCTCTTGGTGTTGGTGAGGCTGGGCATCTACATCCCCATTCCAGGGATTGACCGCGAAGCCT
TCCAACAATTCATTCAGCAAGGCGGCCAGCTGATTGGCTTCCTCGACATCTTTACCGGCGGCGGCATCTCGGCCTTGGGC
ATCTTTGCCCTTGGGATCCTGCCGTTCATTAACGCCTCGATCATCCTGCAGCTGCTGACTGCAGCCCTCCCGAGCCTGGA
GGATCTCCAGAAAAACGAGGGAGAAGCGGGGCGTCGCAAGATCGCCCAAATCACCCGCTATGTCGCCCTGGGCTGGGGTG
TGCTGCAGAGCATCGTCTTCGCGATGATCCTGCGCCCTTACGCCTTGGAATCGGTCCCCCAGGTGGTGTTTGTGGCCCAA
ACCGCCTTGGCCCTGGTGACCGGTTCGATGGTGGTGATGTGGATCTCAGAGGTGATCACCGAACGGGGCATTGGCCAAGG
CGCCTCCCTGGTGATCTTTTTGAACATCGTGGCGACCTTGCCGCGAGCCCTGGGCTCCACAGTCGAATTGGCCCAGAGCG
GCGATCGCGGCACCATTGCCGGCATCATCGTGCTGGTGCTCGTTTTCCTGATCACGATCCTGGGGATCGTTTGCGTGCAG
GAAGGCAGTCGTCGCATCCCGATTGTGAGCGCCAAACGCCAGGTGGGCGCTGGAGCAATGCTGCCTGAGCGACAAAGCTA
TTTGCCCTTGAAGCTCAATGCCGGGGGCGTGATGCCGATCATCTTTGCCTCGGCGGTGATCTTCCTGCCCCTCACCATTG
CCAACCTCACCAAGAGTGAGCTCCTGGTCAGGGTGGCTGGTTACCTCAACCCCAACAGCAGCACCCCGTGGCTCTATGCC
CTGGTGTTTTTTGGCTTGATCTGCGGGTTCTCGTTCTTCTACGCCACCTTGACGATCAACCCCCAGGACATCGCCTCCAA
CCTCAAAAAAGGTGGCGTCGCGGTGCCCGGAGTCAGGCCAGGCACGGCGACGGCGAAATACCTCGGCGGTGTGCAAAACA
GGCTCACCCTGCTCGGTGGCATCTTTTTGGGCGCCGTCGCCATCATTCCGGCTGCCGTAGAAGGGGCCACCAACGTCAAG
ACCTTCCAGGGTCTTGGTGCCACCTCTCTGCTGATCCTGGTGGGCGTTGCCATTGACACCGCCAAGCAGGTTCAGACCTA
TGTGATCTCCCAGCGTTACGAAGGAATGGTGCGTCAATGA

Upstream 100 bases:

>100_bases
GCGGCGTTCACCGCCTCGGCCCGCGAGAAGATCGAAGCCGCCGGCGGCAGCTGCGAACTGATCGACTGATCCCCCCGGTC
CACTTTCAACTTCGCGAGTC

Downstream 100 bases:

>100_bases
GTCATCGACTGCTGTTTGTCGGCCCACCTGGTGCCGGCAAAGGAACCCAAGCAGAACGCCTGGCCGCGAACCATGGGCTG
CTTCATCTCTCCACAGGCGA

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MLVSRGRTPSAGEVVTQLFQAKGLRDRVLTTLGLLVLVRLGIYIPIPGIDREAFQQFIQQGGQLIGFLDIFTGGGISALG
IFALGILPFINASIILQLLTAALPSLEDLQKNEGEAGRRKIAQITRYVALGWGVLQSIVFAMILRPYALESVPQVVFVAQ
TALALVTGSMVVMWISEVITERGIGQGASLVIFLNIVATLPRALGSTVELAQSGDRGTIAGIIVLVLVFLITILGIVCVQ
EGSRRIPIVSAKRQVGAGAMLPERQSYLPLKLNAGGVMPIIFASAVIFLPLTIANLTKSELLVRVAGYLNPNSSTPWLYA
LVFFGLICGFSFFYATLTINPQDIASNLKKGGVAVPGVRPGTATAKYLGGVQNRLTLLGGIFLGAVAIIPAAVEGATNVK
TFQGLGATSLLILVGVAIDTAKQVQTYVISQRYEGMVRQ

Sequences:

>Translated_439_residues
MLVSRGRTPSAGEVVTQLFQAKGLRDRVLTTLGLLVLVRLGIYIPIPGIDREAFQQFIQQGGQLIGFLDIFTGGGISALG
IFALGILPFINASIILQLLTAALPSLEDLQKNEGEAGRRKIAQITRYVALGWGVLQSIVFAMILRPYALESVPQVVFVAQ
TALALVTGSMVVMWISEVITERGIGQGASLVIFLNIVATLPRALGSTVELAQSGDRGTIAGIIVLVLVFLITILGIVCVQ
EGSRRIPIVSAKRQVGAGAMLPERQSYLPLKLNAGGVMPIIFASAVIFLPLTIANLTKSELLVRVAGYLNPNSSTPWLYA
LVFFGLICGFSFFYATLTINPQDIASNLKKGGVAVPGVRPGTATAKYLGGVQNRLTLLGGIFLGAVAIIPAAVEGATNVK
TFQGLGATSLLILVGVAIDTAKQVQTYVISQRYEGMVRQ
>Mature_439_residues
MLVSRGRTPSAGEVVTQLFQAKGLRDRVLTTLGLLVLVRLGIYIPIPGIDREAFQQFIQQGGQLIGFLDIFTGGGISALG
IFALGILPFINASIILQLLTAALPSLEDLQKNEGEAGRRKIAQITRYVALGWGVLQSIVFAMILRPYALESVPQVVFVAQ
TALALVTGSMVVMWISEVITERGIGQGASLVIFLNIVATLPRALGSTVELAQSGDRGTIAGIIVLVLVFLITILGIVCVQ
EGSRRIPIVSAKRQVGAGAMLPERQSYLPLKLNAGGVMPIIFASAVIFLPLTIANLTKSELLVRVAGYLNPNSSTPWLYA
LVFFGLICGFSFFYATLTINPQDIASNLKKGGVAVPGVRPGTATAKYLGGVQNRLTLLGGIFLGAVAIIPAAVEGATNVK
TFQGLGATSLLILVGVAIDTAKQVQTYVISQRYEGMVRQ

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=425, Percent_Identity=42.8235294117647, Blast_Score=270, Evalue=1e-73,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 46529; Mature: 46529

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: PS00755 SECY_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVSRGRTPSAGEVVTQLFQAKGLRDRVLTTLGLLVLVRLGIYIPIPGIDREAFQQFIQQ
CCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHC
GGQLIGFLDIFTGGGISALGIFALGILPFINASIILQLLTAALPSLEDLQKNEGEAGRRK
CCCEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHH
IAQITRYVALGWGVLQSIVFAMILRPYALESVPQVVFVAQTALALVTGSMVVMWISEVIT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERGIGQGASLVIFLNIVATLPRALGSTVELAQSGDRGTIAGIIVLVLVFLITILGIVCVQ
HCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
EGSRRIPIVSAKRQVGAGAMLPERQSYLPLKLNAGGVMPIIFASAVIFLPLTIANLTKSE
CCCCCCCEEECCHHCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
LLVRVAGYLNPNSSTPWLYALVFFGLICGFSFFYATLTINPQDIASNLKKGGVAVPGVRP
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHCCEECCCCCC
GTATAKYLGGVQNRLTLLGGIFLGAVAIIPAAVEGATNVKTFQGLGATSLLILVGVAIDT
CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHH
AKQVQTYVISQRYEGMVRQ
HHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLVSRGRTPSAGEVVTQLFQAKGLRDRVLTTLGLLVLVRLGIYIPIPGIDREAFQQFIQQ
CCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCEECCCCCCHHHHHHHHHC
GGQLIGFLDIFTGGGISALGIFALGILPFINASIILQLLTAALPSLEDLQKNEGEAGRRK
CCCEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHH
IAQITRYVALGWGVLQSIVFAMILRPYALESVPQVVFVAQTALALVTGSMVVMWISEVIT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ERGIGQGASLVIFLNIVATLPRALGSTVELAQSGDRGTIAGIIVLVLVFLITILGIVCVQ
HCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
EGSRRIPIVSAKRQVGAGAMLPERQSYLPLKLNAGGVMPIIFASAVIFLPLTIANLTKSE
CCCCCCCEEECCHHCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
LLVRVAGYLNPNSSTPWLYALVFFGLICGFSFFYATLTINPQDIASNLKKGGVAVPGVRP
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHCCEECCCCCC
GTATAKYLGGVQNRLTLLGGIFLGAVAIIPAAVEGATNVKTFQGLGATSLLILVGVAIDT
CCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHH
AKQVQTYVISQRYEGMVRQ
HHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1420358 [H]