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The map label for this gene is rodA [H]

Identifier: 148243184

GI number: 148243184

Start: 1801213

End: 1802493

Strand: Direct

Name: rodA [H]

Synonym: SynRCC307_2085

Alternate gene names: 148243184

Gene position: 1801213-1802493 (Clockwise)

Preceding gene: 148243183

Following gene: 148243185

Centisome position: 80.96

GC content: 61.75

Gene sequence:

>1281_bases
ATGCCCACCTACCAGGGGACCCGAGCCACGCGACTGGGAGCCAAAGCGCGGGGCCAGCGGCGACAACGGATTCGTTTTGA
TCCGGTTCTCTGGGGAATTCCGGTCTTTTTGACCCTGCTCGCTGGTGTTCTGATCGCCAGTACCCAACGTCAATCACCGT
TGGCCGACTGGGAAAACCACTGGATCACCGCCGTGGTGGCCATCGGCGCAGCCGTGGGCCTCTCCCGGGTTGCGCTCAAG
CATCTGCAGCAACTGCTGCTGCCGGTCTACATCGCGACTCTGGTGAGTTTGCTGGCGGTGAAGCTGGTGGGCACCAGCGC
CCTGGGGGCCCAGCGCTGGATCTCGATCGGCGGCTTCAATATCCAGCCATCGGAGTTCGCCAAGCTCGCCGCCATCCTGT
TGCTGGCTGGAATCCTGGCCAAGCACCCGATCGAGCGCCCGGTGGATCTGCTGCGCCCGATGGCTGTGATCTCGGTGCCC
TGGGCGATGGTGTTCATCCAGCCCGATCTCGGCACATCCCTGGTTTTTGGCGCCGTGCTGCTGGCGATGCTCTATTGGGC
CGGCCTGCCACTGGAGTGGCTGGTTCTGTTGATCTCGCCGCTACCCACAGCCCTGATCGCTGGTCTCTTCCCCTGGGGAT
TAATCCCTTGGGGTGCCCTATTGGTGCTGCTGGCCTGGCGCAGCCTGCCCTGGAAAGCCATCGCCGTGGTGGCGACCCTG
GCCATCAATGGGATCTTTGCCTGGATCACCCCCCTGCTCTGGGAGCACGGACTGAAGGACTATCAGCGCGATCGCCTCAT
CCTGTTTTTGGATCCCACCAAAGACCCCCTTGGTGGCGGTTACCACCTGCTGCAAAGCACCGTTGGCATTGGCTCTGGGC
AAATTTTCGGCACCGGTTTGATGCAGGGTCAGCTCACCAAATTGCAGTTCATTCCTGAGCAACACACCGACTTCATCTTC
AGCGCCTTGGGCGAAGAGGCCGGGTTCATCGGTTGCGTTGTGGTCTTGGTGGCCTACCTCGTTTGGGCCTGGCGACTGCT
GCAAATCGCGGGTCAAGCCCGCAGTGATTTCGAGTCGCTGGTGGTGATCGGCGTGCTGGCGATGGTGATGTTCCAGGTGG
TGATCAACATCAACATGACCATCGGCCTGGGCCCTGTGACGGGCATCCCCCTGCCCTGGCTTAGTTATGGGCGCTTTGCC
CTGCTGGTGAATTTCATGGGCATTGGCCTGGTGGCCTCCGTTGAGCGAGAGGCCCGGCGGGCTCGCATGCGTTTGAAGTG
A

Upstream 100 bases:

>100_bases
AGTGGCCGCCCTGTCACGATCAGCCAGCCAGACAGTGTCACTGCGGCAGTCTTCAAGAACCTGGCCAGCGGCCTGATAGC
TGCGCTCAAGATCTGACCCG

Downstream 100 bases:

>100_bases
GCGCCAACGATTCCCTGCAGACGCTGCGGCAACGCCTGGCAGCAGGGGTTCCCGCCTCAGGCGGCGATGACGCCAGTGCC
AGGCGCCAGTGGTGGGCAGC

Product: rod shape-determining protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 426; Mature: 425

Protein sequence:

>426_residues
MPTYQGTRATRLGAKARGQRRQRIRFDPVLWGIPVFLTLLAGVLIASTQRQSPLADWENHWITAVVAIGAAVGLSRVALK
HLQQLLLPVYIATLVSLLAVKLVGTSALGAQRWISIGGFNIQPSEFAKLAAILLLAGILAKHPIERPVDLLRPMAVISVP
WAMVFIQPDLGTSLVFGAVLLAMLYWAGLPLEWLVLLISPLPTALIAGLFPWGLIPWGALLVLLAWRSLPWKAIAVVATL
AINGIFAWITPLLWEHGLKDYQRDRLILFLDPTKDPLGGGYHLLQSTVGIGSGQIFGTGLMQGQLTKLQFIPEQHTDFIF
SALGEEAGFIGCVVVLVAYLVWAWRLLQIAGQARSDFESLVVIGVLAMVMFQVVININMTIGLGPVTGIPLPWLSYGRFA
LLVNFMGIGLVASVEREARRARMRLK

Sequences:

>Translated_426_residues
MPTYQGTRATRLGAKARGQRRQRIRFDPVLWGIPVFLTLLAGVLIASTQRQSPLADWENHWITAVVAIGAAVGLSRVALK
HLQQLLLPVYIATLVSLLAVKLVGTSALGAQRWISIGGFNIQPSEFAKLAAILLLAGILAKHPIERPVDLLRPMAVISVP
WAMVFIQPDLGTSLVFGAVLLAMLYWAGLPLEWLVLLISPLPTALIAGLFPWGLIPWGALLVLLAWRSLPWKAIAVVATL
AINGIFAWITPLLWEHGLKDYQRDRLILFLDPTKDPLGGGYHLLQSTVGIGSGQIFGTGLMQGQLTKLQFIPEQHTDFIF
SALGEEAGFIGCVVVLVAYLVWAWRLLQIAGQARSDFESLVVIGVLAMVMFQVVININMTIGLGPVTGIPLPWLSYGRFA
LLVNFMGIGLVASVEREARRARMRLK
>Mature_425_residues
PTYQGTRATRLGAKARGQRRQRIRFDPVLWGIPVFLTLLAGVLIASTQRQSPLADWENHWITAVVAIGAAVGLSRVALKH
LQQLLLPVYIATLVSLLAVKLVGTSALGAQRWISIGGFNIQPSEFAKLAAILLLAGILAKHPIERPVDLLRPMAVISVPW
AMVFIQPDLGTSLVFGAVLLAMLYWAGLPLEWLVLLISPLPTALIAGLFPWGLIPWGALLVLLAWRSLPWKAIAVVATLA
INGIFAWITPLLWEHGLKDYQRDRLILFLDPTKDPLGGGYHLLQSTVGIGSGQIFGTGLMQGQLTKLQFIPEQHTDFIFS
ALGEEAGFIGCVVVLVAYLVWAWRLLQIAGQARSDFESLVVIGVLAMVMFQVVININMTIGLGPVTGIPLPWLSYGRFAL
LVNFMGIGLVASVEREARRARMRLK

Specific function: This is one of the proteins responsible for the rod shape of the cell. It is required for the expression of the enzymatic activity of PBP2, which is thought to synthesize peptidoglycan in the step of initiation of cell elongation [H]

COG id: COG0772

COG function: function code D; Bacterial cell division membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ftsW/rodA/spoVE family [H]

Homologues:

Organism=Escherichia coli, GI1786853, Length=339, Percent_Identity=33.9233038348083, Blast_Score=167, Evalue=1e-42,
Organism=Escherichia coli, GI1786277, Length=350, Percent_Identity=30.2857142857143, Blast_Score=145, Evalue=4e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001182
- InterPro:   IPR018365
- InterPro:   IPR011923 [H]

Pfam domain/function: PF01098 FTSW_RODA_SPOVE [H]

EC number: NA

Molecular weight: Translated: 46569; Mature: 46438

Theoretical pI: Translated: 10.66; Mature: 10.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTYQGTRATRLGAKARGQRRQRIRFDPVLWGIPVFLTLLAGVLIASTQRQSPLADWENH
CCCCCCCCHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
WITAVVAIGAAVGLSRVALKHLQQLLLPVYIATLVSLLAVKLVGTSALGAQRWISIGGFN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHEECCCC
IQPSEFAKLAAILLLAGILAKHPIERPVDLLRPMAVISVPWAMVFIQPDLGTSLVFGAVL
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHH
LAMLYWAGLPLEWLVLLISPLPTALIAGLFPWGLIPWGALLVLLAWRSLPWKAIAVVATL
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
AINGIFAWITPLLWEHGLKDYQRDRLILFLDPTKDPLGGGYHLLQSTVGIGSGQIFGTGL
HHHHHHHHHHHHHHHHCHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCEEECHH
MQGQLTKLQFIPEQHTDFIFSALGEEAGFIGCVVVLVAYLVWAWRLLQIAGQARSDFESL
CCCCHHHHEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVIGVLAMVMFQVVININMTIGLGPVTGIPLPWLSYGRFALLVNFMGIGLVASVEREARR
HHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARMRLK
HHCCCC
>Mature Secondary Structure 
PTYQGTRATRLGAKARGQRRQRIRFDPVLWGIPVFLTLLAGVLIASTQRQSPLADWENH
CCCCCCCHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
WITAVVAIGAAVGLSRVALKHLQQLLLPVYIATLVSLLAVKLVGTSALGAQRWISIGGFN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHEECCCC
IQPSEFAKLAAILLLAGILAKHPIERPVDLLRPMAVISVPWAMVFIQPDLGTSLVFGAVL
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHH
LAMLYWAGLPLEWLVLLISPLPTALIAGLFPWGLIPWGALLVLLAWRSLPWKAIAVVATL
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
AINGIFAWITPLLWEHGLKDYQRDRLILFLDPTKDPLGGGYHLLQSTVGIGSGQIFGTGL
HHHHHHHHHHHHHHHHCHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCEEECHH
MQGQLTKLQFIPEQHTDFIFSALGEEAGFIGCVVVLVAYLVWAWRLLQIAGQARSDFESL
CCCCHHHHEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVIGVLAMVMFQVVININMTIGLGPVTGIPLPWLSYGRFALLVNFMGIGLVASVEREARR
HHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARMRLK
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]