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The map label for this gene is rpcF [H]

Identifier: 148243166

GI number: 148243166

Start: 1787551

End: 1788207

Strand: Direct

Name: rpcF [H]

Synonym: SynRCC307_2067

Alternate gene names: 148243166

Gene position: 1787551-1788207 (Clockwise)

Preceding gene: 148243165

Following gene: 148243167

Centisome position: 80.34

GC content: 65.6

Gene sequence:

>657_bases
GTGAGTCAGGCCAATGCCGAAGCACTAGAAACACAGCTGCAGGCCATTGCGCAGGCCGCCACCCGCGAGGCGTTAGCGAA
CGCCAGCGCCCAGCTGGTGGCCTTGATGCCGCAATTGAGCGAGGAACCGCCCCTGCAAGCGCAAGCAATCGACTGCTGCA
TCGATCTGCTGAAAGCCAACAACCCCGCTGCCGCCCTGCAGGCCCTGCGCGGCTTGATCGGCTGCGGCTCAGCTGCGGTT
GAACCGTTGCTCAACAGCCTCGATGAGCGCAACTACGGCGCCCGCGCCTGGACGGTGCGTGCCCTCTCCGCGATCCAAGA
CCCCCGTGGCCTTGAGGTGCTGCAACGCGCCGTGGCCAATGACATCGGTCCCAGCGTTCGCCAAGCCGCGGCCTATGGCC
TGGGCCGCTTGCAAGGGCATGACGAGAACCTGCTGCAGCCATGCATGAACAGCCTGGAGCTGGCCTGCAGCGATAGCGAG
TGGTCGGTGCGCTATGCCGCCGTGGCCGCCCTTGAGCAGAGGCTTCAGCAGGGCTTGCCTAGCGATCTAGACCCCCAGGC
ACGTGCCCTACTGCGGCAGAGGAGCCAACAGGAGATGGACGATACGCTCGTCGTTCGTTTGCGCGCGCTTCTCGCCCTCG
AGCGCCTGGCTGCATGA

Upstream 100 bases:

>100_bases
TGGCCCTGCGCCAGTTATTGGAGCAACCGCTCCAAGGCCCCGCGCCCTCAGCCCTGGGCGAGCAAGAGCGCCACTTGTTG
ACCCTGATGGATGGTTTGCT

Downstream 100 bases:

>100_bases
GCTCCCAACCCACCCGCGTTCTGTTTGTTTGCCTCGGCAACATCTGCCGCTCACCGGCTGCCGAGGGGGTGTTTCTCGAT
TTGCTTGAGCGTGAAAACCT

Product: phycobilin lyase beta subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 217

Protein sequence:

>218_residues
MSQANAEALETQLQAIAQAATREALANASAQLVALMPQLSEEPPLQAQAIDCCIDLLKANNPAAALQALRGLIGCGSAAV
EPLLNSLDERNYGARAWTVRALSAIQDPRGLEVLQRAVANDIGPSVRQAAAYGLGRLQGHDENLLQPCMNSLELACSDSE
WSVRYAAVAALEQRLQQGLPSDLDPQARALLRQRSQQEMDDTLVVRLRALLALERLAA

Sequences:

>Translated_218_residues
MSQANAEALETQLQAIAQAATREALANASAQLVALMPQLSEEPPLQAQAIDCCIDLLKANNPAAALQALRGLIGCGSAAV
EPLLNSLDERNYGARAWTVRALSAIQDPRGLEVLQRAVANDIGPSVRQAAAYGLGRLQGHDENLLQPCMNSLELACSDSE
WSVRYAAVAALEQRLQQGLPSDLDPQARALLRQRSQQEMDDTLVVRLRALLALERLAA
>Mature_217_residues
SQANAEALETQLQAIAQAATREALANASAQLVALMPQLSEEPPLQAQAIDCCIDLLKANNPAAALQALRGLIGCGSAAVE
PLLNSLDERNYGARAWTVRALSAIQDPRGLEVLQRAVANDIGPSVRQAAAYGLGRLQGHDENLLQPCMNSLELACSDSEW
SVRYAAVAALEQRLQQGLPSDLDPQARALLRQRSQQEMDDTLVVRLRALLALERLAA

Specific function: An enzyme involved in the biosynthesis of bilin. Might be involved in the specific attachment of phycoerythrobilin (PEB) to the R-phycocyanin II alpha chain [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CpcE/RpcE/PecE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011989
- InterPro:   IPR016024
- InterPro:   IPR004155 [H]

Pfam domain/function: PF03130 HEAT_PBS [H]

EC number: 4.-.-.-

Molecular weight: Translated: 23369; Mature: 23238

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQANAEALETQLQAIAQAATREALANASAQLVALMPQLSEEPPLQAQAIDCCIDLLKAN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
NPAAALQALRGLIGCGSAAVEPLLNSLDERNYGARAWTVRALSAIQDPRGLEVLQRAVAN
CHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
DIGPSVRQAAAYGLGRLQGHDENLLQPCMNSLELACSDSEWSVRYAAVAALEQRLQQGLP
HCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
SDLDPQARALLRQRSQQEMDDTLVVRLRALLALERLAA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SQANAEALETQLQAIAQAATREALANASAQLVALMPQLSEEPPLQAQAIDCCIDLLKAN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
NPAAALQALRGLIGCGSAAVEPLLNSLDERNYGARAWTVRALSAIQDPRGLEVLQRAVAN
CHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
DIGPSVRQAAAYGLGRLQGHDENLLQPCMNSLELACSDSEWSVRYAAVAALEQRLQQGLP
HCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
SDLDPQARALLRQRSQQEMDDTLVVRLRALLALERLAA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8425055 [H]