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The map label for this gene is rpcA [H]

Identifier: 148243163

GI number: 148243163

Start: 1785878

End: 1786366

Strand: Direct

Name: rpcA [H]

Synonym: SynRCC307_2064

Alternate gene names: 148243163

Gene position: 1785878-1786366 (Clockwise)

Preceding gene: 148243162

Following gene: 148243165

Centisome position: 80.27

GC content: 59.71

Gene sequence:

>489_bases
ATGAAAACCCCCCTCACCGAAGCCGTTTCAGCTGCTGATTCTCAGGGTCGCTTCCTCAGCAACACTGAAATCCAGAGCGC
TTCTGGCCGCTTCAACCGCGCCAAGGCCAGCCTCGAGGCTGCCAAGGGCCTGACTGCCAAAGCTGATGCTCTTGTGAACG
GCGCTGCCCAAGCGGTGTACAGCAAGTTCCCCTACACCACCCAGATGCAGGGTTCGAACTACTCCACCACTCCTGAAGGC
AAAGCCAAGTGCTCCCGCGACGTGGGCTACTACCTGCGGATGATCACCTACTGCCTGGTGGCTGGTGGCACCGGCCCCAT
GGATGACTACCTGATCGCTGGTCTCGACGAGATCAACCGCACCTTCGAGCTCTCCCCCTCCTGGTACGTCGAAGCCCTGA
ACCACATCAAGGCCAACCACGGCCTCAGTGGTGATGCCGCTACCGAAGCCAACAGCTACATCGACTACGCCATCAACGCT
CTGGTCTGA

Upstream 100 bases:

>100_bases
TGCCCTCGCCAGCGAAATCGGCACCTACTTCGACCGCGCTGCCGCCGCTGTGGCCTGAGCCTGAGCTGACTCGTTTCTCC
CACAACGCTTTTCCAAGATC

Downstream 100 bases:

>100_bases
TCACCACAGCCCATTGGCACAGCAAAGCCCCCCTCCACGAGGGGGGCTTTTTTATGGCTCAGCAACACTCAACCAAAGGA
CGCGCTAGTCCTCCAGCAAG

Product: R-phycocyanin II alpha chain

Products: NA

Alternate protein names: R-phycocyanin II alpha chain [H]

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MKTPLTEAVSAADSQGRFLSNTEIQSASGRFNRAKASLEAAKGLTAKADALVNGAAQAVYSKFPYTTQMQGSNYSTTPEG
KAKCSRDVGYYLRMITYCLVAGGTGPMDDYLIAGLDEINRTFELSPSWYVEALNHIKANHGLSGDAATEANSYIDYAINA
LV

Sequences:

>Translated_162_residues
MKTPLTEAVSAADSQGRFLSNTEIQSASGRFNRAKASLEAAKGLTAKADALVNGAAQAVYSKFPYTTQMQGSNYSTTPEG
KAKCSRDVGYYLRMITYCLVAGGTGPMDDYLIAGLDEINRTFELSPSWYVEALNHIKANHGLSGDAATEANSYIDYAINA
LV
>Mature_162_residues
MKTPLTEAVSAADSQGRFLSNTEIQSASGRFNRAKASLEAAKGLTAKADALVNGAAQAVYSKFPYTTQMQGSNYSTTPEG
KAKCSRDVGYYLRMITYCLVAGGTGPMDDYLIAGLDEINRTFELSPSWYVEALNHIKANHGLSGDAATEANSYIDYAINA
LV

Specific function: Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=Part of the phycobilisome rod (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phycobiliprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009050
- InterPro:   IPR012128
- InterPro:   IPR006246 [H]

Pfam domain/function: PF00502 Phycobilisome [H]

EC number: NA

Molecular weight: Translated: 17336; Mature: 17336

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTPLTEAVSAADSQGRFLSNTEIQSASGRFNRAKASLEAAKGLTAKADALVNGAAQAVY
CCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
SKFPYTTQMQGSNYSTTPEGKAKCSRDVGYYLRMITYCLVAGGTGPMDDYLIAGLDEINR
HHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCHHHHCC
TFELSPSWYVEALNHIKANHGLSGDAATEANSYIDYAINALV
EEECCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKTPLTEAVSAADSQGRFLSNTEIQSASGRFNRAKASLEAAKGLTAKADALVNGAAQAVY
CCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
SKFPYTTQMQGSNYSTTPEGKAKCSRDVGYYLRMITYCLVAGGTGPMDDYLIAGLDEINR
HHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCHHHHCC
TFELSPSWYVEALNHIKANHGLSGDAATEANSYIDYAINALV
EEECCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8425055 [H]