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The map label for this gene is rpcB [H]

Identifier: 148243162

GI number: 148243162

Start: 1785317

End: 1785835

Strand: Direct

Name: rpcB [H]

Synonym: SynRCC307_2063

Alternate gene names: 148243162

Gene position: 1785317-1785835 (Clockwise)

Preceding gene: 148243161

Following gene: 148243163

Centisome position: 80.24

GC content: 63.39

Gene sequence:

>519_bases
ATGTTCGACGCCTTCACCAAGGTCGTTGCCCAGGCCGACGCCCGGGGCCAATTCATCGGCACCGGTGAAATCGACGCCCT
GGCAGCCATGGTTGCTGACAGCAACAAGCGCCTCGATGCTGTGAACCGCATCACCAGCAACGCCTCCTCCATCGTGGCCA
ACGCTGCACGCGATCTGTTTGCCCAGCAGCCTGCCCTGATCGCTCCTGGCGGCAACGCCTACACCTCCCGCCGCATGGCT
GCTTGCCTGCGCGACATGGAGATCGTGCTGCGTTACGTGACCTACGCAGTCTTCGCTGGCGACGCTTCGGTTCTCGAGGA
CCGCTGCCTCAATGGCCTTCGTGAGACCTACCTGGCCTTGGGCACCCCCGGCGCTTCGGTTGCTGCAGCCATCAACCTGA
TGAAGGAAACCGCAGTGAATCTGGTGAATGACCGCAACGGCATCACCCAGGGTGACTGCACTGCCCTCGCCAGCGAAATC
GGCACCTACTTCGACCGCGCTGCCGCCGCTGTGGCCTGA

Upstream 100 bases:

>100_bases
TCTCCCCTGTGACGGGGTGGGTCCGCCCCCCGGCCGTCCCCACCCCCCAAAGTCGCTAAGACTTCTTCGACCCGAAGTAG
CCCCAAGGAGTTCCCCTCAA

Downstream 100 bases:

>100_bases
GCCTGAGCTGACTCGTTTCTCCCACAACGCTTTTCCAAGATCATGAAAACCCCCCTCACCGAAGCCGTTTCAGCTGCTGA
TTCTCAGGGTCGCTTCCTCA

Product: R-phycocyanin II beta chain

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MFDAFTKVVAQADARGQFIGTGEIDALAAMVADSNKRLDAVNRITSNASSIVANAARDLFAQQPALIAPGGNAYTSRRMA
ACLRDMEIVLRYVTYAVFAGDASVLEDRCLNGLRETYLALGTPGASVAAAINLMKETAVNLVNDRNGITQGDCTALASEI
GTYFDRAAAAVA

Sequences:

>Translated_172_residues
MFDAFTKVVAQADARGQFIGTGEIDALAAMVADSNKRLDAVNRITSNASSIVANAARDLFAQQPALIAPGGNAYTSRRMA
ACLRDMEIVLRYVTYAVFAGDASVLEDRCLNGLRETYLALGTPGASVAAAINLMKETAVNLVNDRNGITQGDCTALASEI
GTYFDRAAAAVA
>Mature_172_residues
MFDAFTKVVAQADARGQFIGTGEIDALAAMVADSNKRLDAVNRITSNASSIVANAARDLFAQQPALIAPGGNAYTSRRMA
ACLRDMEIVLRYVTYAVFAGDASVLEDRCLNGLRETYLALGTPGASVAAAINLMKETAVNLVNDRNGITQGDCTALASEI
GTYFDRAAAAVA

Specific function: Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=Part of the phycobilisome rod (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phycobiliprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009050
- InterPro:   IPR012128
- InterPro:   IPR006247 [H]

Pfam domain/function: PF00502 Phycobilisome [H]

EC number: NA

Molecular weight: Translated: 18043; Mature: 18043

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: PS00012 PHOSPHOPANTETHEINE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDAFTKVVAQADARGQFIGTGEIDALAAMVADSNKRLDAVNRITSNASSIVANAARDLF
CCHHHHHHHHHHCCCCCEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AQQPALIAPGGNAYTSRRMAACLRDMEIVLRYVTYAVFAGDASVLEDRCLNGLRETYLAL
HCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
GTPGASVAAAINLMKETAVNLVNDRNGITQGDCTALASEIGTYFDRAAAAVA
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFDAFTKVVAQADARGQFIGTGEIDALAAMVADSNKRLDAVNRITSNASSIVANAARDLF
CCHHHHHHHHHHCCCCCEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AQQPALIAPGGNAYTSRRMAACLRDMEIVLRYVTYAVFAGDASVLEDRCLNGLRETYLAL
HCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
GTPGASVAAAINLMKETAVNLVNDRNGITQGDCTALASEIGTYFDRAAAAVA
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1912508 [H]