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The map label for this gene is mpeD [H]

Identifier: 148243138

GI number: 148243138

Start: 1767560

End: 1769200

Strand: Direct

Name: mpeD [H]

Synonym: SynRCC307_2039

Alternate gene names: 148243138

Gene position: 1767560-1769200 (Clockwise)

Preceding gene: 148243137

Following gene: 148243139

Centisome position: 79.44

GC content: 59.11

Gene sequence:

>1641_bases
ATGGCCACACAATCCTCCGGTTTCGGCGCCACCACCAAGTGGAGCAGCCCCGTCAGCTTCCAACGCAAAGGGCAAGCCAA
GGACAAGCCGGCACTCACCAACGGTGAGTTTCTGAAGCAGTCCTGCGATCAGATGAAGATCGGCGTGGGTCCCCGCAGCC
ATGCGGACTGCCCCCATCGTGTGACCGCTGAGTGCTACAGCCCTGACGATTCAGCAGCTCTTACTGAAGCGATTAACGCT
TCCTACCGCCAGGTGTTTGGCAATGCTCATGTCATGGACTTCGAGCGCTGCACCGAACTGGAAGCCCAGCTTTGCAATGG
TGACCTGGACGTCCGCAACTTTGTTCGGGGTCTGGCCAAGTCAAGCTTCTACAAGAGCCGCTTTTTCTCAAGCGTTGCCC
CCCAACGCGGCATCGAACTGAACTTCAAGCACCTGCTGGGACGCGCGCCCCATTCTCAGGCTGAAGTGTCCGGCAAGATT
GCAGTGCTTGCTGAGCACGGCCACGACGCTGTTATCGACAGCATCGTTGACTCAGCTGAGTATCTCGAAGTTTTCGGCGG
CGATGTTGTTCCCTACGCCCGCGCCTGGAGCTCACCAGCTGATCTAGCCACCTCTGCCTTCTCTTTGCTGGCTGCACTCC
AGAAAAACTTTGCAGGCAGTGATAGCGCTCGTGGCGGCAGCAGCGCCCTGATGCGCAGCCTTGGCAGCAACACAGCTCCT
CCAATCAGCCGCAGCACCGAAGTGGCTGGCTATATGCCGTCCAGCACCTCCAAGCTGGGGCGTTTCAGCTCGAAAGAGCC
CGGTGTCACCAGTGGTCGCGACACCGCTCCGATGCGCGGTGACGTGTATGTCTCCTTCGGCTTGGCACAACGCGAGCAAG
AGACCTTCCAACGCTGCCCTGGCGACAGCCCTGATCAGGTGAATGCCCTGATTCGCTCAACTTACCGCCAAGTGATGGGC
AACCCCCACCTGATGGAATTCGAGCGCAGTATGTCAGCTGAGAGCAAGTATCAAGACGGATACCTCAGCACCCGTGAATT
CGTGCGGGCCATTGGCCTCTCCGCCGAATACAAGAAGCGTTTCTTCGAGACCAACGCTCCTTATCGCTTCATCGAGCTGA
ACTTCAAGCACTTCCTGGGGCGTGCCCCTCAGTCCCAAGCTGAGATCAGTGAGCACACCAAGATCCTGGCTGAAGGCGGT
TACGAAGCAGAGATCAGCAGCTACGTCGACAGCGAGGAGTATCAATCCACCTTCGGCGAGGACACTGTTCCCTTCGCCCG
CATCCTTTCGGAGAACGGTCGCTCCCAGGTTGGCTTTAACCGCCACCTGAGCCTGGCTGAAGGCTTTGCCGCCAGCGACA
CGGTGCTCACAGGCTCTTCGCTGGTGACCTCGGTCGCCACCGGCATGGCCCCCAGCGGCTGGACCACCACCAGTAGCCGG
ATCAACCGCACTGGCACCCAGTCGGGTGCACCAGATCCCACCAAAAAGCGTTTCCGCATTGTGGTGGCAGCGCAAGCCGC
ACGTTCCCGTCAGCGCACCGCCAACTCCACCTATCTCGTGTCCGGTAAGGACATGAGTTCCCAGATGAAGTACATCCACG
CACGCGGCGGCAAGATCGTCTCCATTACTGAGGTGATGTAA

Upstream 100 bases:

>100_bases
CACCGAGAAGGCGGAAAGATCGCCAGCATCACGCCTGTGACCTAAGGGCTCTCCCACTCCCACTCCTTATTTCCCAACCC
CACCTCACTCGACGACTCCC

Downstream 100 bases:

>100_bases
TCAGCCCCCAATAGGGCTTACCCCCGGCGAACACAATCGTCGGGGGCTCTTTTTTGCACAAAACACTCCCACTTCAACTC
CATGTCTGGAACCATCACCC

Product: phycobilisome linker polypeptide, C-phycoerythrin class I and II-associated

Products: NA

Alternate protein names: L-R 32.1; Phycobilisome 32.1 kDa rod linker polypeptide; Phycoerythrin class II gamma chain, linker polypeptide [H]

Number of amino acids: Translated: 546; Mature: 545

Protein sequence:

>546_residues
MATQSSGFGATTKWSSPVSFQRKGQAKDKPALTNGEFLKQSCDQMKIGVGPRSHADCPHRVTAECYSPDDSAALTEAINA
SYRQVFGNAHVMDFERCTELEAQLCNGDLDVRNFVRGLAKSSFYKSRFFSSVAPQRGIELNFKHLLGRAPHSQAEVSGKI
AVLAEHGHDAVIDSIVDSAEYLEVFGGDVVPYARAWSSPADLATSAFSLLAALQKNFAGSDSARGGSSALMRSLGSNTAP
PISRSTEVAGYMPSSTSKLGRFSSKEPGVTSGRDTAPMRGDVYVSFGLAQREQETFQRCPGDSPDQVNALIRSTYRQVMG
NPHLMEFERSMSAESKYQDGYLSTREFVRAIGLSAEYKKRFFETNAPYRFIELNFKHFLGRAPQSQAEISEHTKILAEGG
YEAEISSYVDSEEYQSTFGEDTVPFARILSENGRSQVGFNRHLSLAEGFAASDTVLTGSSLVTSVATGMAPSGWTTTSSR
INRTGTQSGAPDPTKKRFRIVVAAQAARSRQRTANSTYLVSGKDMSSQMKYIHARGGKIVSITEVM

Sequences:

>Translated_546_residues
MATQSSGFGATTKWSSPVSFQRKGQAKDKPALTNGEFLKQSCDQMKIGVGPRSHADCPHRVTAECYSPDDSAALTEAINA
SYRQVFGNAHVMDFERCTELEAQLCNGDLDVRNFVRGLAKSSFYKSRFFSSVAPQRGIELNFKHLLGRAPHSQAEVSGKI
AVLAEHGHDAVIDSIVDSAEYLEVFGGDVVPYARAWSSPADLATSAFSLLAALQKNFAGSDSARGGSSALMRSLGSNTAP
PISRSTEVAGYMPSSTSKLGRFSSKEPGVTSGRDTAPMRGDVYVSFGLAQREQETFQRCPGDSPDQVNALIRSTYRQVMG
NPHLMEFERSMSAESKYQDGYLSTREFVRAIGLSAEYKKRFFETNAPYRFIELNFKHFLGRAPQSQAEISEHTKILAEGG
YEAEISSYVDSEEYQSTFGEDTVPFARILSENGRSQVGFNRHLSLAEGFAASDTVLTGSSLVTSVATGMAPSGWTTTSSR
INRTGTQSGAPDPTKKRFRIVVAAQAARSRQRTANSTYLVSGKDMSSQMKYIHARGGKIVSITEVM
>Mature_545_residues
ATQSSGFGATTKWSSPVSFQRKGQAKDKPALTNGEFLKQSCDQMKIGVGPRSHADCPHRVTAECYSPDDSAALTEAINAS
YRQVFGNAHVMDFERCTELEAQLCNGDLDVRNFVRGLAKSSFYKSRFFSSVAPQRGIELNFKHLLGRAPHSQAEVSGKIA
VLAEHGHDAVIDSIVDSAEYLEVFGGDVVPYARAWSSPADLATSAFSLLAALQKNFAGSDSARGGSSALMRSLGSNTAPP
ISRSTEVAGYMPSSTSKLGRFSSKEPGVTSGRDTAPMRGDVYVSFGLAQREQETFQRCPGDSPDQVNALIRSTYRQVMGN
PHLMEFERSMSAESKYQDGYLSTREFVRAIGLSAEYKKRFFETNAPYRFIELNFKHFLGRAPQSQAEISEHTKILAEGGY
EAEISSYVDSEEYQSTFGEDTVPFARILSENGRSQVGFNRHLSLAEGFAASDTVLTGSSLVTSVATGMAPSGWTTTSSRI
NRTGTQSGAPDPTKKRFRIVVAAQAARSRQRTANSTYLVSGKDMSSQMKYIHARGGKIVSITEVM

Specific function: This protein is a bile pigment-bearing rod linker polypeptide that associates with C-phycoerythrin [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=Periphery of the rods of the phycobilisome [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PBS-linker domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001297
- InterPro:   IPR016470
- ProDom:   PD000852 [H]

Pfam domain/function: PF00427 PBS_linker_poly [H]

EC number: NA

Molecular weight: Translated: 59387; Mature: 59256

Theoretical pI: Translated: 8.53; Mature: 8.53

Prosite motif: PS00778 HIS_ACID_PHOSPHAT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATQSSGFGATTKWSSPVSFQRKGQAKDKPALTNGEFLKQSCDQMKIGVGPRSHADCPHR
CCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHEEECCCCCCCCCCCCC
VTAECYSPDDSAALTEAINASYRQVFGNAHVMDFERCTELEAQLCNGDLDVRNFVRGLAK
CHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHCCCCCHHHHHHHHHH
SSFYKSRFFSSVAPQRGIELNFKHLLGRAPHSQAEVSGKIAVLAEHGHDAVIDSIVDSAE
HHHHHHHHHHHHCCCCCCEECHHHHHCCCCCCHHHCCCCEEEEEECCCHHHHHHHHHHHH
YLEVFGGDVVPYARAWSSPADLATSAFSLLAALQKNFAGSDSARGGSSALMRSLGSNTAP
HHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCC
PISRSTEVAGYMPSSTSKLGRFSSKEPGVTSGRDTAPMRGDVYVSFGLAQREQETFQRCP
CCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHCC
GDSPDQVNALIRSTYRQVMGNPHLMEFERSMSAESKYQDGYLSTREFVRAIGLSAEYKKR
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHCCCCHHHHHHHHHHCCCHHHHHH
FFETNAPYRFIELNFKHFLGRAPQSQAEISEHTKILAEGGYEAEISSYVDSEEYQSTFGE
HHCCCCCEEEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHCCC
DTVPFARILSENGRSQVGFNRHLSLAEGFAASDTVLTGSSLVTSVATGMAPSGWTTTSSR
CCHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCEEECHHHHHHHHHCCCCCCCCCCHHH
INRTGTQSGAPDPTKKRFRIVVAAQAARSRQRTANSTYLVSGKDMSSQMKYIHARGGKIV
HCCCCCCCCCCCCCHHHEEEEEEHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCEEE
SITEVM
EEECCC
>Mature Secondary Structure 
ATQSSGFGATTKWSSPVSFQRKGQAKDKPALTNGEFLKQSCDQMKIGVGPRSHADCPHR
CCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHEEECCCCCCCCCCCCC
VTAECYSPDDSAALTEAINASYRQVFGNAHVMDFERCTELEAQLCNGDLDVRNFVRGLAK
CHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHCCCCCHHHHHHHHHH
SSFYKSRFFSSVAPQRGIELNFKHLLGRAPHSQAEVSGKIAVLAEHGHDAVIDSIVDSAE
HHHHHHHHHHHHCCCCCCEECHHHHHCCCCCCHHHCCCCEEEEEECCCHHHHHHHHHHHH
YLEVFGGDVVPYARAWSSPADLATSAFSLLAALQKNFAGSDSARGGSSALMRSLGSNTAP
HHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCC
PISRSTEVAGYMPSSTSKLGRFSSKEPGVTSGRDTAPMRGDVYVSFGLAQREQETFQRCP
CCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHCC
GDSPDQVNALIRSTYRQVMGNPHLMEFERSMSAESKYQDGYLSTREFVRAIGLSAEYKKR
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHCCCCHHHHHHHHHHCCCHHHHHH
FFETNAPYRFIELNFKHFLGRAPQSQAEISEHTKILAEGGYEAEISSYVDSEEYQSTFGE
HHCCCCCEEEEEECHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCHHHHHHHCCC
DTVPFARILSENGRSQVGFNRHLSLAEGFAASDTVLTGSSLVTSVATGMAPSGWTTTSSR
CCHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCCCEEECHHHHHHHHHCCCCCCCCCCHHH
INRTGTQSGAPDPTKKRFRIVVAAQAARSRQRTANSTYLVSGKDMSSQMKYIHARGGKIV
HCCCCCCCCCCCCCHHHEEEEEEHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCEEE
SITEVM
EEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8425055; 8419325 [H]