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The map label for this gene is cpeC [H]

Identifier: 148243137

GI number: 148243137

Start: 1766626

End: 1767504

Strand: Direct

Name: cpeC [H]

Synonym: SynRCC307_2038

Alternate gene names: 148243137

Gene position: 1766626-1767504 (Clockwise)

Preceding gene: 148243136

Following gene: 148243138

Centisome position: 79.4

GC content: 59.84

Gene sequence:

>879_bases
ATGCCTTTTGGTCCCGCATCGCTTTTGGGTGTCGAGCGCTTTGATAGCGACACTCCCCTTGAGCTCCTTCCGGGTGACGA
CGACGCAAGGAAGGAACAGATCATTCGTGCGATCTACCGGCAGGTGCTGGGGAACGCCTATGTGATGGATAGTGAGCGCC
AAGTGGTGATCGAATCCCAGTTCAAACTTGGTGAAATCAGCGTGCGGGAATTTGTCCGCAGGCTGGCCAAGAGCGATCTG
TACCGCACCCGCTTTTTTGACGACTGCGCGCGCTACCGCTACATCGAACTGGCTTTCCGCCATCTGCTTGGCCGCGCACC
AGTCGATTTCCAGGAGATGCGCACCCACGCCGAGCGCCTCGATAGCCACGGCTATGACGCCGACATCGACAGCTTCCTGG
ACTCCAGCGACTACCAGGACACCTTCGGTGAATGGACCGTTCCCTTCCAGCGCGGTTGGCGCACCGAAGCATGCGGGACC
CTGCAGGAGTTCACTTGGAACTTCCAGCTGCTCCGCGGCAATAGCAGCAGCAGCCTGAAGGGAAGCCTCAGCGGCAACAG
CTCCCGCCTAGGCGGTTTTGCTTACCAGAACACCGCGATCCCGGTGGTTCCCCCCTCATCTATCGAAGCGCAAGGCTGGA
GCTTCCGTCCCGCCAACAACCTGCAGAACGCTGCTACTCGCCTTGGCAACGGCGCGGGCGAGGAAGGGAAGACCTACCGC
GTGGAAGTCACCGGCTACAGCGCCAACAATGTGCGCCGCATCTCCCGTTATGTGCGCAGCAACCGGGTCTATTACGTGCC
GTTCGACAAGCTCTCTGAGCAGTTCAAACGCATCCACCGAGAAGGCGGAAAGATCGCCAGCATCACGCCTGTGACCTAA

Upstream 100 bases:

>100_bases
ACTTCCCGGGGACTGCCAGGAAGTTGAGCTTTATAAACAAACGCCTTGCAACAAGGAGTTGTGGCCGACCATGCTATGGC
GCTTCGGAGTGTCTGCCTCA

Downstream 100 bases:

>100_bases
GGGCTCTCCCACTCCCACTCCTTATTTCCCAACCCCACCTCACTCGACGACTCCCATGGCCACACAATCCTCCGGTTTCG
GCGCCACCACCAAGTGGAGC

Product: phycobilisome linker polypeptide, C-phycoerythrin class I-associated

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 291

Protein sequence:

>292_residues
MPFGPASLLGVERFDSDTPLELLPGDDDARKEQIIRAIYRQVLGNAYVMDSERQVVIESQFKLGEISVREFVRRLAKSDL
YRTRFFDDCARYRYIELAFRHLLGRAPVDFQEMRTHAERLDSHGYDADIDSFLDSSDYQDTFGEWTVPFQRGWRTEACGT
LQEFTWNFQLLRGNSSSSLKGSLSGNSSRLGGFAYQNTAIPVVPPSSIEAQGWSFRPANNLQNAATRLGNGAGEEGKTYR
VEVTGYSANNVRRISRYVRSNRVYYVPFDKLSEQFKRIHREGGKIASITPVT

Sequences:

>Translated_292_residues
MPFGPASLLGVERFDSDTPLELLPGDDDARKEQIIRAIYRQVLGNAYVMDSERQVVIESQFKLGEISVREFVRRLAKSDL
YRTRFFDDCARYRYIELAFRHLLGRAPVDFQEMRTHAERLDSHGYDADIDSFLDSSDYQDTFGEWTVPFQRGWRTEACGT
LQEFTWNFQLLRGNSSSSLKGSLSGNSSRLGGFAYQNTAIPVVPPSSIEAQGWSFRPANNLQNAATRLGNGAGEEGKTYR
VEVTGYSANNVRRISRYVRSNRVYYVPFDKLSEQFKRIHREGGKIASITPVT
>Mature_291_residues
PFGPASLLGVERFDSDTPLELLPGDDDARKEQIIRAIYRQVLGNAYVMDSERQVVIESQFKLGEISVREFVRRLAKSDLY
RTRFFDDCARYRYIELAFRHLLGRAPVDFQEMRTHAERLDSHGYDADIDSFLDSSDYQDTFGEWTVPFQRGWRTEACGTL
QEFTWNFQLLRGNSSSSLKGSLSGNSSRLGGFAYQNTAIPVVPPSSIEAQGWSFRPANNLQNAATRLGNGAGEEGKTYRV
EVTGYSANNVRRISRYVRSNRVYYVPFDKLSEQFKRIHREGGKIASITPVT

Specific function: Rod linker protein, associated with phycoerythrocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to medi

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=Associated with phycoerythrin [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PBS-linker domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001297
- InterPro:   IPR016470
- InterPro:   IPR008213
- ProDom:   PD000852 [H]

Pfam domain/function: PF01383 CpcD; PF00427 PBS_linker_poly [H]

EC number: NA

Molecular weight: Translated: 33242; Mature: 33111

Theoretical pI: Translated: 8.17; Mature: 8.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFGPASLLGVERFDSDTPLELLPGDDDARKEQIIRAIYRQVLGNAYVMDSERQVVIESQ
CCCCCHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCEEEECCCCEEEEECC
FKLGEISVREFVRRLAKSDLYRTRFFDDCARYRYIELAFRHLLGRAPVDFQEMRTHAERL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
DSHGYDADIDSFLDSSDYQDTFGEWTVPFQRGWRTEACGTLQEFTWNFQLLRGNSSSSLK
HCCCCCCCHHHHHCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHCEEEEEEECCCCCCCE
GSLSGNSSRLGGFAYQNTAIPVVPPSSIEAQGWSFRPANNLQNAATRLGNGAGEEGKTYR
EECCCCCCCCCCEEECCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEE
VEVTGYSANNVRRISRYVRSNRVYYVPFDKLSEQFKRIHREGGKIASITPVT
EEEECCCCHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHCCCCEEEECCCC
>Mature Secondary Structure 
PFGPASLLGVERFDSDTPLELLPGDDDARKEQIIRAIYRQVLGNAYVMDSERQVVIESQ
CCCCHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHHHHCCEEEECCCCEEEEECC
FKLGEISVREFVRRLAKSDLYRTRFFDDCARYRYIELAFRHLLGRAPVDFQEMRTHAERL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
DSHGYDADIDSFLDSSDYQDTFGEWTVPFQRGWRTEACGTLQEFTWNFQLLRGNSSSSLK
HCCCCCCCHHHHHCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHCEEEEEEECCCCCCCE
GSLSGNSSRLGGFAYQNTAIPVVPPSSIEAQGWSFRPANNLQNAATRLGNGAGEEGKTYR
EECCCCCCCCCCEEECCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEE
VEVTGYSANNVRRISRYVRSNRVYYVPFDKLSEQFKRIHREGGKIASITPVT
EEEECCCCHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHCCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1694529 [H]