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The map label for this gene is apcB [H]

Identifier: 148242987

GI number: 148242987

Start: 1645428

End: 1645916

Strand: Direct

Name: apcB [H]

Synonym: SynRCC307_1888

Alternate gene names: 148242987

Gene position: 1645428-1645916 (Clockwise)

Preceding gene: 148242986

Following gene: 148242988

Centisome position: 73.95

GC content: 60.74

Gene sequence:

>489_bases
ATGCAAGACGCGATCACCAACGTCATCAATCAGTCCGACGTTCAGGGCCTCTACCTGGACACCAACTCGATGGGCCGTCT
GGAGCAGTATTTCGCCAGTGGCGAACTGCGGGTCCGCGCCGCTGCCACCATCAGCGCCAACGCCTCCAACATCATTCGTG
ATGCCGTTGCCAAGGCGCTGCTCTACTCCGACATCACCCGCCCCGGCGGGAACATGTACACCACCCGTCGCTATGCAGCT
TGCATCCGCGACATGGACTACTACCTGCGGTATTCCACCTACGCCATGCTGGCCGGCGACACCTCCATCCTTGATGAGCG
TGTGCTGAATGGCCTCAAGGAGACCTACAACTCCCTGGGCGTGCCCATCGGTGCCACCGTTCAAGCCATCCAGGCCATGA
AGGAAGCCACCGCCGCTCTGGTTGGTGCTGATGCCGGTCGCGAAATGGCCGTCTACTTCGACTACATCTGCTCAGGCCTC
GGCAACTGA

Upstream 100 bases:

>100_bases
CGGCGAAGACGCCGAGGAAGCAGGCTTCTACTTCGACTATGTGATCGGCGCCCTCTCCTGAGGCCCGAACAGAACCCACT
CACTTCACCCTCAGGAATCC

Downstream 100 bases:

>100_bases
GCCAGGAGCTCCCCTCCCACTACGGAGCCCCATGCGCCTCTTCAAAGTCACCGCCTGCATCCCCAGTCCGGAGAAAATCC
AGACTCAACGGGAGATCCAG

Product: allophycocyanin subunit beta

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MQDAITNVINQSDVQGLYLDTNSMGRLEQYFASGELRVRAAATISANASNIIRDAVAKALLYSDITRPGGNMYTTRRYAA
CIRDMDYYLRYSTYAMLAGDTSILDERVLNGLKETYNSLGVPIGATVQAIQAMKEATAALVGADAGREMAVYFDYICSGL
GN

Sequences:

>Translated_162_residues
MQDAITNVINQSDVQGLYLDTNSMGRLEQYFASGELRVRAAATISANASNIIRDAVAKALLYSDITRPGGNMYTTRRYAA
CIRDMDYYLRYSTYAMLAGDTSILDERVLNGLKETYNSLGVPIGATVQAIQAMKEATAALVGADAGREMAVYFDYICSGL
GN
>Mature_162_residues
MQDAITNVINQSDVQGLYLDTNSMGRLEQYFASGELRVRAAATISANASNIIRDAVAKALLYSDITRPGGNMYTTRRYAA
CIRDMDYYLRYSTYAMLAGDTSILDERVLNGLKETYNSLGVPIGATVQAIQAMKEATAALVGADAGREMAVYFDYICSGL
GN

Specific function: Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex. Allophycocyanin has a maximum absorption at approximately 650 nanometers [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=Forms the core of the phycobilisome [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phycobiliprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006245
- InterPro:   IPR009050
- InterPro:   IPR012128 [H]

Pfam domain/function: PF00502 Phycobilisome [H]

EC number: NA

Molecular weight: Translated: 17609; Mature: 17609

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDAITNVINQSDVQGLYLDTNSMGRLEQYFASGELRVRAAATISANASNIIRDAVAKAL
CCHHHHHHHCCCCCCEEEECCCCHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHHHH
LYSDITRPGGNMYTTRRYAACIRDMDYYLRYSTYAMLAGDTSILDERVLNGLKETYNSLG
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHCC
VPIGATVQAIQAMKEATAALVGADAGREMAVYFDYICSGLGN
CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQDAITNVINQSDVQGLYLDTNSMGRLEQYFASGELRVRAAATISANASNIIRDAVAKAL
CCHHHHHHHCCCCCCEEEECCCCHHHHHHHHHCCCEEEEEEEEECCCHHHHHHHHHHHHH
LYSDITRPGGNMYTTRRYAACIRDMDYYLRYSTYAMLAGDTSILDERVLNGLKETYNSLG
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHCC
VPIGATVQAIQAMKEATAALVGADAGREMAVYFDYICSGLGN
CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA