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The map label for this gene is apcC [H]

Identifier: 148242988

GI number: 148242988

Start: 1645948

End: 1646148

Strand: Direct

Name: apcC [H]

Synonym: SynRCC307_1889

Alternate gene names: 148242988

Gene position: 1645948-1646148 (Clockwise)

Preceding gene: 148242987

Following gene: 148242989

Centisome position: 73.98

GC content: 53.73

Gene sequence:

>201_bases
ATGCGCCTCTTCAAAGTCACCGCCTGCATCCCCAGTCCGGAGAAAATCCAGACTCAACGGGAGATCCAGAACACCTTCTT
TACCAAGTGGGTGCCCTATGAGAGCTGGTTCGCTGAGCAGCAGCGGATCATGAAACAAGGCGGAAAAATCATCAAAGTTG
AGCTGGTCACCGGTCGCCGGCAAGCCAACGTTGGCAATTGA

Upstream 100 bases:

>100_bases
GTTGGTGCTGATGCCGGTCGCGAAATGGCCGTCTACTTCGACTACATCTGCTCAGGCCTCGGCAACTGAGCCAGGAGCTC
CCCTCCCACTACGGAGCCCC

Downstream 100 bases:

>100_bases
CTGTTGATCGCTCGAAAGTCCTGCGCCCGGCCCAGTGCCGGGCTTTTTTTTGTCCTTGCCCAGGTGCCTGTCCAGCCGCC
ACACGGCTCAATAGGCCATT

Product: phycobilisome linker polypeptide, allophycocyanin-associated, core (LC 7.7)

Products: NA

Alternate protein names: LC 7.8 [H]

Number of amino acids: Translated: 66; Mature: 66

Protein sequence:

>66_residues
MRLFKVTACIPSPEKIQTQREIQNTFFTKWVPYESWFAEQQRIMKQGGKIIKVELVTGRRQANVGN

Sequences:

>Translated_66_residues
MRLFKVTACIPSPEKIQTQREIQNTFFTKWVPYESWFAEQQRIMKQGGKIIKVELVTGRRQANVGN
>Mature_66_residues
MRLFKVTACIPSPEKIQTQREIQNTFFTKWVPYESWFAEQQRIMKQGGKIIKVELVTGRRQANVGN

Specific function: Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=This protein occurs in the rod, it is associated with allophycocyanin (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cpcD-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011134
- InterPro:   IPR011064
- InterPro:   IPR008213 [H]

Pfam domain/function: PF01383 CpcD [H]

EC number: NA

Molecular weight: Translated: 7756; Mature: 7756

Theoretical pI: Translated: 10.82; Mature: 10.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLFKVTACIPSPEKIQTQREIQNTFFTKWVPYESWFAEQQRIMKQGGKIIKVELVTGRR
CCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCC
QANVGN
CCCCCC
>Mature Secondary Structure
MRLFKVTACIPSPEKIQTQREIQNTFFTKWVPYESWFAEQQRIMKQGGKIIKVELVTGRR
CCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCC
QANVGN
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3031427 [H]