| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
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The map label for this gene is ald [H]
Identifier: 148242970
GI number: 148242970
Start: 1630720
End: 1631859
Strand: Direct
Name: ald [H]
Synonym: SynRCC307_1871
Alternate gene names: 148242970
Gene position: 1630720-1631859 (Clockwise)
Preceding gene: 148242969
Following gene: 148242971
Centisome position: 73.29
GC content: 68.51
Gene sequence:
>1140_bases ATGGCCGCTCCCCAACCCGCCGCCTCGATGAGCAGCATCGGCATTCCTCGGGAGATCAAGCCCGATGAGCAGCGGGTGGC TCTCACCCCCGATGCCGTGCGCGAGCTGGTGAGCATTGGCCTGGAGGTGCGAATTGAGCAGGGCGCTGGCCGCGGAGCTG GCATCGATGACGCCAGCTTTGCCGCCGCCGGCGCAGCCATGGTGTCCAAAGAGGAGGCCTGGGCCGCTCACCTGGTGGTG AAGGTGAAAGAACCGCAGCCCGAGGAGTTCGGCTTCTTGCGCCGCGACATGGTGCTGTTCACCTACCTGCACCTGGCGGC CTACCCCGCTGTTGGCAAGGCCCTCCTGGAGAGCGGCTGCACCTCGATTGCCTACGAAACGGTGCAGCTGGAGAACGGCA GCCTGCCCCTGCTGGCGCCGATGAGCGAAATCGCCGGCCGGCTCGCCACCCAAGCAGGGGCCTACCTGCTGGAGCGTCCC CATGGCGGTCGCGGCGTGCTGCTCGGCGGCTGCACCGGCGTCAAGCCCGCCCGGGTGGTGGTGTTGGGCGCCGGCACCGT GGGCTGGAACGCGGCCCGCGTCGCAGCAGCCATGGATGCCGAGGTGATGCTGCTGGATCGCTCCCCGCAGCGGCTGCGCA ATCTGGAAGCCGACCGGCGCGGACGCCTGGTCAGCTTGGTGAGCAGCCGCGGCTTGATCGAACGGGTGATCCCCACCGCC GATCTACTGATCGGTGCGGTGCTCACCCCGGGCGGGCGGGCCCCAACCCTGGTGGATGAAGCGCTGGTGCAACAGATGCG CCCCGGCTCGGTGATCGTCGATGTGGCCATCGATCAAGGCGGCTGCATCGCCAGCAGCGAGGAGACCACCCACACCGAAC CGGTGATCGAAAAATTTGGCGTGCAGCACTACGCCGTCGGCAACATGCCTGGCGCTGTTCCCTTCACCTCCACCGAAGCG CTGGTGAGCGTGACGCTGCCCTACATCGTCACCATTGCCGGACGGGGCCTGAGCGAAGCGGTGACCGAGCGCCCCGAGCT GCTCTCCGGGCTCAACACCGTCGACGGGGCGGTGTGCCATCCCGGTGTTGCCCGGGCCCTCGATGTGCCCCCACGCCACC CCATGGCCTGCCTGCGCTAA
Upstream 100 bases:
>100_bases GAGTGCTCGCTCCTTCGGTTGCGGTTGGCGCATGCCAATCTCCGCCAGAACTGGCGCCGAAGGCTAGGAATCGCCAGGCT GATAGCAGAACCAACCCACC
Downstream 100 bases:
>100_bases GCAACGTGAATTAACGGCTGCTGAGGGGAAAGAAGAGATTCATCGCATCCCTTTGGCTTCGCCAAACCTCTGGATACACC AGGCAAGCACCCCGCCCGGC
Product: alanine dehydrogenase
Products: NA
Alternate protein names: Stage V sporulation protein N [H]
Number of amino acids: Translated: 379; Mature: 378
Protein sequence:
>379_residues MAAPQPAASMSSIGIPREIKPDEQRVALTPDAVRELVSIGLEVRIEQGAGRGAGIDDASFAAAGAAMVSKEEAWAAHLVV KVKEPQPEEFGFLRRDMVLFTYLHLAAYPAVGKALLESGCTSIAYETVQLENGSLPLLAPMSEIAGRLATQAGAYLLERP HGGRGVLLGGCTGVKPARVVVLGAGTVGWNAARVAAAMDAEVMLLDRSPQRLRNLEADRRGRLVSLVSSRGLIERVIPTA DLLIGAVLTPGGRAPTLVDEALVQQMRPGSVIVDVAIDQGGCIASSEETTHTEPVIEKFGVQHYAVGNMPGAVPFTSTEA LVSVTLPYIVTIAGRGLSEAVTERPELLSGLNTVDGAVCHPGVARALDVPPRHPMACLR
Sequences:
>Translated_379_residues MAAPQPAASMSSIGIPREIKPDEQRVALTPDAVRELVSIGLEVRIEQGAGRGAGIDDASFAAAGAAMVSKEEAWAAHLVV KVKEPQPEEFGFLRRDMVLFTYLHLAAYPAVGKALLESGCTSIAYETVQLENGSLPLLAPMSEIAGRLATQAGAYLLERP HGGRGVLLGGCTGVKPARVVVLGAGTVGWNAARVAAAMDAEVMLLDRSPQRLRNLEADRRGRLVSLVSSRGLIERVIPTA DLLIGAVLTPGGRAPTLVDEALVQQMRPGSVIVDVAIDQGGCIASSEETTHTEPVIEKFGVQHYAVGNMPGAVPFTSTEA LVSVTLPYIVTIAGRGLSEAVTERPELLSGLNTVDGAVCHPGVARALDVPPRHPMACLR >Mature_378_residues AAPQPAASMSSIGIPREIKPDEQRVALTPDAVRELVSIGLEVRIEQGAGRGAGIDDASFAAAGAAMVSKEEAWAAHLVVK VKEPQPEEFGFLRRDMVLFTYLHLAAYPAVGKALLESGCTSIAYETVQLENGSLPLLAPMSEIAGRLATQAGAYLLERPH GGRGVLLGGCTGVKPARVVVLGAGTVGWNAARVAAAMDAEVMLLDRSPQRLRNLEADRRGRLVSLVSSRGLIERVIPTAD LLIGAVLTPGGRAPTLVDEALVQQMRPGSVIVDVAIDQGGCIASSEETTHTEPVIEKFGVQHYAVGNMPGAVPFTSTEAL VSVTLPYIVTIAGRGLSEAVTERPELLSGLNTVDGAVCHPGVARALDVPPRHPMACLR
Specific function: This enzyme is a key factor in the assimilation of L- alanine as an energy source through the tricarboxylic acid cycle during sporulation [H]
COG id: COG0686
COG function: function code E; Alanine dehydrogenase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the AlaDH/PNT family [H]
Homologues:
Organism=Homo sapiens, GI122939155, Length=331, Percent_Identity=29.607250755287, Blast_Score=110, Evalue=2e-24, Organism=Homo sapiens, GI122939153, Length=331, Percent_Identity=29.607250755287, Blast_Score=110, Evalue=2e-24, Organism=Escherichia coli, GI1787887, Length=329, Percent_Identity=30.0911854103343, Blast_Score=128, Evalue=7e-31, Organism=Caenorhabditis elegans, GI17550456, Length=360, Percent_Identity=28.0555555555556, Blast_Score=117, Evalue=1e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007698 - InterPro: IPR008142 - InterPro: IPR008143 - InterPro: IPR007886 - InterPro: IPR008141 [H]
Pfam domain/function: PF01262 AlaDh_PNT_C; PF05222 AlaDh_PNT_N [H]
EC number: =1.4.1.1 [H]
Molecular weight: Translated: 39715; Mature: 39584
Theoretical pI: Translated: 5.68; Mature: 5.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAPQPAASMSSIGIPREIKPDEQRVALTPDAVRELVSIGLEVRIEQGAGRGAGIDDASF CCCCCCCCHHHHCCCCCCCCCCCCEEEECHHHHHHHHHCCEEEEEECCCCCCCCCCCHHH AAAGAAMVSKEEAWAAHLVVKVKEPQPEEFGFLRRDMVLFTYLHLAAYPAVGKALLESGC HHHHHHHHHHHHHCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC TSIAYETVQLENGSLPLLAPMSEIAGRLATQAGAYLLERPHGGRGVLLGGCTGVKPARVV HHHEEEEEEECCCCCCEECCHHHHHHHHHHHHCHHEEECCCCCCEEEEECCCCCCCEEEE VLGAGTVGWNAARVAAAMDAEVMLLDRSPQRLRNLEADRRGRLVSLVSSRGLIERVIPTA EEECCCCCCCHHHHHHHCCCEEEEECCCHHHHHCCCHHHCCCCHHHHHCCCHHHHHCCHH DLLIGAVLTPGGRAPTLVDEALVQQMRPGSVIVDVAIDQGGCIASSEETTHTEPVIEKFG HHHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCEECCCCCCCHHHHHHHHC VQHYAVGNMPGAVPFTSTEALVSVTLPYIVTIAGRGLSEAVTERPELLSGLNTVDGAVCH CCEEEECCCCCCCCCCCCHHHHHHHHHHHEEECCCCHHHHHHCCHHHHHCCCCCCCCCCC PGVARALDVPPRHPMACLR CCHHHHCCCCCCCCHHHCC >Mature Secondary Structure AAPQPAASMSSIGIPREIKPDEQRVALTPDAVRELVSIGLEVRIEQGAGRGAGIDDASF CCCCCCCHHHHCCCCCCCCCCCCEEEECHHHHHHHHHCCEEEEEECCCCCCCCCCCHHH AAAGAAMVSKEEAWAAHLVVKVKEPQPEEFGFLRRDMVLFTYLHLAAYPAVGKALLESGC HHHHHHHHHHHHHCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC TSIAYETVQLENGSLPLLAPMSEIAGRLATQAGAYLLERPHGGRGVLLGGCTGVKPARVV HHHEEEEEEECCCCCCEECCHHHHHHHHHHHHCHHEEECCCCCCEEEEECCCCCCCEEEE VLGAGTVGWNAARVAAAMDAEVMLLDRSPQRLRNLEADRRGRLVSLVSSRGLIERVIPTA EEECCCCCCCHHHHHHHCCCEEEEECCCHHHHHCCCHHHCCCCHHHHHCCCHHHHHCCHH DLLIGAVLTPGGRAPTLVDEALVQQMRPGSVIVDVAIDQGGCIASSEETTHTEPVIEKFG HHHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCEECCCCCCCHHHHHHHHC VQHYAVGNMPGAVPFTSTEALVSVTLPYIVTIAGRGLSEAVTERPELLSGLNTVDGAVCH CCEEEECCCCCCCCCCCCHHHHHHHHHHHEEECCCCHHHHHHCCHHHHHCCCCCCCCCCC PGVARALDVPPRHPMACLR CCHHHHCCCCCCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8226620; 9384377 [H]