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The map label for this gene is psbV [H]

Identifier: 148242939

GI number: 148242939

Start: 1603528

End: 1604073

Strand: Direct

Name: psbV [H]

Synonym: SynRCC307_1840

Alternate gene names: 148242939

Gene position: 1603528-1604073 (Clockwise)

Preceding gene: 148242938

Following gene: 148242944

Centisome position: 72.07

GC content: 60.99

Gene sequence:

>546_bases
GTGATACAAGGGCTCAGGAGACTGTCTCTTTTGCCCCACTCCATGCGCACCGTTCTTCAGGGTCTACGGCGTCTCGGCGC
TCTGCTGCTCCTGCCCATCGCCTTGCTGCTCTTGGCCCCAGCGGCCCATGCCGTGCAGTGGGACGCAGAAACTCTGACCG
TTCCGGCGGATGCCAGCGGCAGCACGGTGACCTTCACCGAGTCCGAGATCAAAGCCGGGCGCAAGGTGTTCAACAACAGT
TGCGGCGAATGCCACGCCGGTGGCATCACCAAGACCAACCAGAACGTGGGACTTGATCCCGAGACTCTGGCCCTGGCCAC
CCCGCCTCGGGACTCCGTAGATGCCCTGGTGGATTACATGAAAGATCCCACCTCCTATGACGGTGAGATCTCGATCGCTG
AATTTCACCCCAGCATGCGCAGCGCCGACGTGTTTGTGAAAATGCGCGATCTCAACGATGAAGACCTGCGCCGCATGGCC
GGTTACATCCTGACGTCCCCGAAAGCGCAGGGAACCCAGTGGGGCGGCGGCAAGATCTACTTCTGA

Upstream 100 bases:

>100_bases
ACCGTGCTGGCCAAGGACTTCCTCAGCATCGAAGTGAGCACCATGGCCTGCAACAGTCTGTGAGTGGCATGACGATTCAG
CCCCGGAGCAGTGCCTGCGC

Downstream 100 bases:

>100_bases
TTCAGCCCTGCTAAACCCAACAGCTTTCAGCCCGCCGCTTCAACGGCGGGCTTTGTTGTGTCTGGGGGGTCAGGGAGTGG
TTGCTCCTGCTCCGGGCGGC

Product: cytochrome c-550

Products: NA

Alternate protein names: Cytochrome c550; Low-potential cytochrome c [H]

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MIQGLRRLSLLPHSMRTVLQGLRRLGALLLLPIALLLLAPAAHAVQWDAETLTVPADASGSTVTFTESEIKAGRKVFNNS
CGECHAGGITKTNQNVGLDPETLALATPPRDSVDALVDYMKDPTSYDGEISIAEFHPSMRSADVFVKMRDLNDEDLRRMA
GYILTSPKAQGTQWGGGKIYF

Sequences:

>Translated_181_residues
MIQGLRRLSLLPHSMRTVLQGLRRLGALLLLPIALLLLAPAAHAVQWDAETLTVPADASGSTVTFTESEIKAGRKVFNNS
CGECHAGGITKTNQNVGLDPETLALATPPRDSVDALVDYMKDPTSYDGEISIAEFHPSMRSADVFVKMRDLNDEDLRRMA
GYILTSPKAQGTQWGGGKIYF
>Mature_181_residues
MIQGLRRLSLLPHSMRTVLQGLRRLGALLLLPIALLLLAPAAHAVQWDAETLTVPADASGSTVTFTESEIKAGRKVFNNS
CGECHAGGITKTNQNVGLDPETLALATPPRDSVDALVDYMKDPTSYDGEISIAEFHPSMRSADVFVKMRDLNDEDLRRMA
GYILTSPKAQGTQWGGGKIYF

Specific function: Low-potential cytochrome c that plays a role in the oxygen-evolving complex of photosystem II [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Lumenal side. Note=Associated with photosystem II at the lumenal side of the thylakoid membrane (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family. PsbV subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR016003
- InterPro:   IPR017851 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 19655; Mature: 19655

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS51007 CYTC ; PS00283 SOYBEAN_KUNITZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQGLRRLSLLPHSMRTVLQGLRRLGALLLLPIALLLLAPAAHAVQWDAETLTVPADASG
CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEEECCCEEEECCCCCC
STVTFTESEIKAGRKVFNNSCGECHAGGITKTNQNVGLDPETLALATPPRDSVDALVDYM
CEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHH
KDPTSYDGEISIAEFHPSMRSADVFVKMRDLNDEDLRRMAGYILTSPKAQGTQWGGGKIY
CCCCCCCCEEEEEECCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCEEC
F
C
>Mature Secondary Structure
MIQGLRRLSLLPHSMRTVLQGLRRLGALLLLPIALLLLAPAAHAVQWDAETLTVPADASG
CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEEECCCEEEECCCCCC
STVTFTESEIKAGRKVFNNSCGECHAGGITKTNQNVGLDPETLALATPPRDSVDALVDYM
CEEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHH
KDPTSYDGEISIAEFHPSMRSADVFVKMRDLNDEDLRRMAGYILTSPKAQGTQWGGGKIY
CCCCCCCCEEEEEECCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCEEC
F
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA