Definition Synechococcus sp. RCC307, complete genome.
Accession NC_009482
Length 2,224,914

Click here to switch to the map view.

The map label for this gene is 148242944

Identifier: 148242944

GI number: 148242944

Start: 1607570

End: 1608067

Strand: Direct

Name: 148242944

Synonym: SynRCC307_1845

Alternate gene names: NA

Gene position: 1607570-1608067 (Clockwise)

Preceding gene: 148242939

Following gene: 148242945

Centisome position: 72.25

GC content: 63.45

Gene sequence:

>498_bases
ATGGGACTGTGCGTGGCTGTGCTGCTGAAGGACACAGGCAGCCGCTCCGAACTCAAGGCCCTGTTGGACGGGCAACCGGG
GCTGCAACTGCGTGCGGTGGGCGCCGGCGGGATCGAGCCAGAGCAGGTGGTGGAGCTCAACCCAGCGCTGCAGCGTCAGG
GGCGCCAACGGCAAATGGCCACCTGGCTGCTGCCCTTTGGCTTCGGTGCCGGCATGGTGTTCACCTTCATCACCAACCTC
GACACCTTTGCTTTCGCCGGTCCTATCGGCCAGCCCTTGATTGGAGGCTTGTTGGGGCTGGGATCTGGCTGGATGGGCAG
CTATGCCGCTGCAGCCAGCGTGACCAGCGACCGCGATGACCAAATTCGCGTGGTGCGCAATCGCCTCAACGAAGGCCAAT
GCGTGCTGTTGATTGATGCCATACAAAGCGAAATGGTGCCCTGGGCCTTGATCCAGCGCTGCCGCCCGGCCAGCGTCGTG
CGGCTCAAGGACGATTAA

Upstream 100 bases:

>100_bases
ATCCCCTTTTGGTCGATGGGGTCAGACACCAAAACTTTTGTCATCGTCCGCAGGCATGCGGTGGTCCAGTGTAGAGACCA
CTGCTGAAGGGCCAAAACTG

Downstream 100 bases:

>100_bases
GCGCCATGATGCCGCGCCGCGACCTGCTCGAGGGGGCCCGCGATCCCCAAGCACTCGAAGCCCTCATTCAGCAAGCCGAA
GTGGTGCTGCGCACCTATCA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 165; Mature: 164

Protein sequence:

>165_residues
MGLCVAVLLKDTGSRSELKALLDGQPGLQLRAVGAGGIEPEQVVELNPALQRQGRQRQMATWLLPFGFGAGMVFTFITNL
DTFAFAGPIGQPLIGGLLGLGSGWMGSYAAAASVTSDRDDQIRVVRNRLNEGQCVLLIDAIQSEMVPWALIQRCRPASVV
RLKDD

Sequences:

>Translated_165_residues
MGLCVAVLLKDTGSRSELKALLDGQPGLQLRAVGAGGIEPEQVVELNPALQRQGRQRQMATWLLPFGFGAGMVFTFITNL
DTFAFAGPIGQPLIGGLLGLGSGWMGSYAAAASVTSDRDDQIRVVRNRLNEGQCVLLIDAIQSEMVPWALIQRCRPASVV
RLKDD
>Mature_164_residues
GLCVAVLLKDTGSRSELKALLDGQPGLQLRAVGAGGIEPEQVVELNPALQRQGRQRQMATWLLPFGFGAGMVFTFITNLD
TFAFAGPIGQPLIGGLLGLGSGWMGSYAAAASVTSDRDDQIRVVRNRLNEGQCVLLIDAIQSEMVPWALIQRCRPASVVR
LKDD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17694; Mature: 17563

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLCVAVLLKDTGSRSELKALLDGQPGLQLRAVGAGGIEPEQVVELNPALQRQGRQRQMA
CCCEEEEEEECCCCHHHHHHHHCCCCCCEEEEECCCCCCHHHEEECCHHHHHCCHHHHHH
TWLLPFGFGAGMVFTFITNLDTFAFAGPIGQPLIGGLLGLGSGWMGSYAAAASVTSDRDD
HHHHHHCCCHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCCCH
QIRVVRNRLNEGQCVLLIDAIQSEMVPWALIQRCRPASVVRLKDD
HHHHHHHHCCCCCEEEEEEHHHHCCCCHHHHHHCCCCEEEEEECC
>Mature Secondary Structure 
GLCVAVLLKDTGSRSELKALLDGQPGLQLRAVGAGGIEPEQVVELNPALQRQGRQRQMA
CCEEEEEEECCCCHHHHHHHHCCCCCCEEEEECCCCCCHHHEEECCHHHHHCCHHHHHH
TWLLPFGFGAGMVFTFITNLDTFAFAGPIGQPLIGGLLGLGSGWMGSYAAAASVTSDRDD
HHHHHHCCCHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCCCH
QIRVVRNRLNEGQCVLLIDAIQSEMVPWALIQRCRPASVVRLKDD
HHHHHHHHCCCCCEEEEEEHHHHCCCCHHHHHHCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA