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The map label for this gene is recD [H]

Identifier: 148242656

GI number: 148242656

Start: 1375133

End: 1376566

Strand: Direct

Name: recD [H]

Synonym: SynRCC307_1557

Alternate gene names: 148242656

Gene position: 1375133-1376566 (Clockwise)

Preceding gene: 148242655

Following gene: 148242657

Centisome position: 61.81

GC content: 66.25

Gene sequence:

>1434_bases
ATGAGCGAAGCCAGTCGCTGCCAGCGGGCTGCTGCCCGACTCCTGAGCCTGGCCCCAGCCGCGGTGCAGGCGGAAGCCAA
AGGCTTACAACCACTGCTCGAACGCTTGCTGCTCTGCCAACTCCAGGGCCGTGAACCCTTGCAGCTCGATGCAGCCGAAC
GCGCTGAACTCACGGCGGCCAGCCAATCCGCCCTGCAGCAGCTACCCGTGGTGCTGGTTGAGCAGGGCGCGCAAGGCGCT
GAACTCTGGAGCCGGCGGCAACACCAGCAGCAGCAGAGCCTGCTGATGGAGTTGGAGCAACGGCTGCATCAACACAGGGG
ACTGCTGCTCACCGGCGGCGCCGGAACGGGCAAAACCACCCGCGTCAGGGAACTGCTCGCTGATGAGCGTGAACGCCACA
CCCTGCTGCTGGCACCAACCGGCAAGGCAGCGGCACGGCTGCGGGAAGCCCTCAGCCCGCTGCCAGCCTCGATGCAGTGC
TCCACCTTGCATCGCGCCTTGGAAGCCAATCCCAGCGGTGGTTTTGGCCGCAACCAGCAGCGCCCCATCAATGCCGAGGT
GGTGGTGGTCGATGAGGTGTCGATGGTGGACACCCAGTTGATGCAAGCCCTGCTGGAGGCGCTGCCGAGCAACACCAGGC
TTGTGTTGGTGGGTGATTCCGCCCAATTGCCGCCCATTGGCGGCAGCAGCGTGCTGGAACCGCTCGAACAGCAGCTCAAG
CAACACCGGCCGCAGCTGCTGTTGCAGCTGGAGCGCTCCCATCGCTTCAACGACTCCACAGCTCTGGGGGGCTTTGTGCA
ACAGCTGCGCGGAGGCAGCCCCACCGCTGAACTACAGCAACAACTGGCTGCCAAAGCTGAGCACAGCAACCTGCATTGGT
GGCCGCTTGAGCAGGGATGGCCCCTGGCCTTGCAACAGCGCATCGAGCAGCACCGCCAACGGCTGGAGCAACAGGCCCAC
AACACGGCTCTCAGTGATGCCGAGGCCCTGGCCTGCCTCGAGGACTTGCTGGTGCTCTCGCCACGGCGCAGTGGCCGTCA
GGGGGTGAGCCAACTGAACCGCCGGTGGCTGCCTCTCACCCAACGGGAGCCCTGGCATTGGCCTGCGGGCACCCCCCTGC
TGGTGGGGCGCAACGATGCCTCCTTGGGGCTCGCCAATGGTGACCGCGGCCTGGTGCGGCCTGGCCCGCAGGGACAAGAG
GCCGTGATCGCCACGGCCGAAGGCCCCAGGCGGCTGCCTTTGGAACTGTTGCCTTGCCCCGAACCAGCCCTTGCCCTCAC
GGTGCACAAAAGCCAAGGCAGCCAGGCTCGCGAGGTGATCGTGGTGCTGCCAGCGGGCAGCGGCTTGGATCGCCGCTTGC
TCTACACGGCTCTAACGCGGGCCCAAGAGCGGCTGGACTTGCTGAGTCCGCCGTTAGACAGCCTCGAGGCGTAA

Upstream 100 bases:

>100_bases
ACTGGCGGCTTGGGGAGGAGACCCCCGTGCGCATTGATGCGGTGATGCTCTTCACCCGCAGCGGCGAGGGGGCCTGGCTG
CTGGATGAGACGGGGCAACC

Downstream 100 bases:

>100_bases
CGCTTCTCGCCAAGGGCTGGCCTCAGGGCAGGCCGCTCTGCCAGGTTGCCAATGGACCGCTGATGCTGGGCATGGATTCC
GATCTCTACCTACTGGCCTG

Product: exodeoxyribonuclease V alpha chain

Products: NA

Alternate protein names: Exodeoxyribonuclease V 67 kDa polypeptide [H]

Number of amino acids: Translated: 477; Mature: 476

Protein sequence:

>477_residues
MSEASRCQRAAARLLSLAPAAVQAEAKGLQPLLERLLLCQLQGREPLQLDAAERAELTAASQSALQQLPVVLVEQGAQGA
ELWSRRQHQQQQSLLMELEQRLHQHRGLLLTGGAGTGKTTRVRELLADERERHTLLLAPTGKAAARLREALSPLPASMQC
STLHRALEANPSGGFGRNQQRPINAEVVVVDEVSMVDTQLMQALLEALPSNTRLVLVGDSAQLPPIGGSSVLEPLEQQLK
QHRPQLLLQLERSHRFNDSTALGGFVQQLRGGSPTAELQQQLAAKAEHSNLHWWPLEQGWPLALQQRIEQHRQRLEQQAH
NTALSDAEALACLEDLLVLSPRRSGRQGVSQLNRRWLPLTQREPWHWPAGTPLLVGRNDASLGLANGDRGLVRPGPQGQE
AVIATAEGPRRLPLELLPCPEPALALTVHKSQGSQAREVIVVLPAGSGLDRRLLYTALTRAQERLDLLSPPLDSLEA

Sequences:

>Translated_477_residues
MSEASRCQRAAARLLSLAPAAVQAEAKGLQPLLERLLLCQLQGREPLQLDAAERAELTAASQSALQQLPVVLVEQGAQGA
ELWSRRQHQQQQSLLMELEQRLHQHRGLLLTGGAGTGKTTRVRELLADERERHTLLLAPTGKAAARLREALSPLPASMQC
STLHRALEANPSGGFGRNQQRPINAEVVVVDEVSMVDTQLMQALLEALPSNTRLVLVGDSAQLPPIGGSSVLEPLEQQLK
QHRPQLLLQLERSHRFNDSTALGGFVQQLRGGSPTAELQQQLAAKAEHSNLHWWPLEQGWPLALQQRIEQHRQRLEQQAH
NTALSDAEALACLEDLLVLSPRRSGRQGVSQLNRRWLPLTQREPWHWPAGTPLLVGRNDASLGLANGDRGLVRPGPQGQE
AVIATAEGPRRLPLELLPCPEPALALTVHKSQGSQAREVIVVLPAGSGLDRRLLYTALTRAQERLDLLSPPLDSLEA
>Mature_476_residues
SEASRCQRAAARLLSLAPAAVQAEAKGLQPLLERLLLCQLQGREPLQLDAAERAELTAASQSALQQLPVVLVEQGAQGAE
LWSRRQHQQQQSLLMELEQRLHQHRGLLLTGGAGTGKTTRVRELLADERERHTLLLAPTGKAAARLREALSPLPASMQCS
TLHRALEANPSGGFGRNQQRPINAEVVVVDEVSMVDTQLMQALLEALPSNTRLVLVGDSAQLPPIGGSSVLEPLEQQLKQ
HRPQLLLQLERSHRFNDSTALGGFVQQLRGGSPTAELQQQLAAKAEHSNLHWWPLEQGWPLALQQRIEQHRQRLEQQAHN
TALSDAEALACLEDLLVLSPRRSGRQGVSQLNRRWLPLTQREPWHWPAGTPLLVGRNDASLGLANGDRGLVRPGPQGQEA
VIATAEGPRRLPLELLPCPEPALALTVHKSQGSQAREVIVVLPAGSGLDRRLLYTALTRAQERLDLLSPPLDSLEA

Specific function: Exhibits several catalytic activities, including ATP- dependent exonuclease, ATP-stimulated endonuclease, ATP-dependent unwinding and DNA-dependent ATPase activities. Strand cleavage occurs 5' to 3' during the unwinding of duplex DNA at CHI sequences, whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recD family [H]

Homologues:

Organism=Escherichia coli, GI1789182, Length=404, Percent_Identity=30.4455445544554, Blast_Score=126, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007807
- InterPro:   IPR006344
- InterPro:   IPR000606 [H]

Pfam domain/function: PF05127 DUF699; PF01443 Viral_helicase1 [H]

EC number: =3.1.11.5 [H]

Molecular weight: Translated: 52210; Mature: 52079

Theoretical pI: Translated: 7.69; Mature: 7.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEASRCQRAAARLLSLAPAAVQAEAKGLQPLLERLLLCQLQGREPLQLDAAERAELTAA
CCHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
SQSALQQLPVVLVEQGAQGAELWSRRQHQQQQSLLMELEQRLHQHRGLLLTGGAGTGKTT
HHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCHH
RVRELLADERERHTLLLAPTGKAAARLREALSPLPASMQCSTLHRALEANPSGGFGRNQQ
HHHHHHHCCHHCCEEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
RPINAEVVVVDEVSMVDTQLMQALLEALPSNTRLVLVGDSAQLPPIGGSSVLEPLEQQLK
CCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHH
QHRPQLLLQLERSHRFNDSTALGGFVQQLRGGSPTAELQQQLAAKAEHSNLHWWPLEQGW
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEECCCCC
PLALQQRIEQHRQRLEQQAHNTALSDAEALACLEDLLVLSPRRSGRQGVSQLNRRWLPLT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCC
QREPWHWPAGTPLLVGRNDASLGLANGDRGLVRPGPQGQEAVIATAEGPRRLPLELLPCP
CCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCC
EPALALTVHKSQGSQAREVIVVLPAGSGLDRRLLYTALTRAQERLDLLSPPLDSLEA
CCCEEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCC
>Mature Secondary Structure 
SEASRCQRAAARLLSLAPAAVQAEAKGLQPLLERLLLCQLQGREPLQLDAAERAELTAA
CHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
SQSALQQLPVVLVEQGAQGAELWSRRQHQQQQSLLMELEQRLHQHRGLLLTGGAGTGKTT
HHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCHH
RVRELLADERERHTLLLAPTGKAAARLREALSPLPASMQCSTLHRALEANPSGGFGRNQQ
HHHHHHHCCHHCCEEEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
RPINAEVVVVDEVSMVDTQLMQALLEALPSNTRLVLVGDSAQLPPIGGSSVLEPLEQQLK
CCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHH
QHRPQLLLQLERSHRFNDSTALGGFVQQLRGGSPTAELQQQLAAKAEHSNLHWWPLEQGW
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEECCCCC
PLALQQRIEQHRQRLEQQAHNTALSDAEALACLEDLLVLSPRRSGRQGVSQLNRRWLPLT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCC
QREPWHWPAGTPLLVGRNDASLGLANGDRGLVRPGPQGQEAVIATAEGPRRLPLELLPCP
CCCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCC
EPALALTVHKSQGSQAREVIVVLPAGSGLDRRLLYTALTRAQERLDLLSPPLDSLEA
CCCEEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]