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The map label for this gene is scpB [H]

Identifier: 148242491

GI number: 148242491

Start: 1240484

End: 1240972

Strand: Direct

Name: scpB [H]

Synonym: SynRCC307_1392

Alternate gene names: 148242491

Gene position: 1240484-1240972 (Clockwise)

Preceding gene: 148242490

Following gene: 148242492

Centisome position: 55.75

GC content: 60.12

Gene sequence:

>489_bases
ATGGTCTCAACCGAGCTCTCTCTTCCGGCCCAACTCGAGGCGATCCTCTACCTCAAGGGGCGCTGCCTGAGCCTGGCGGA
ATTGAGCGAGCTCGCCGGTTGTGAGCGCGATGAGGTGGAGCTAGCGCTGATCACCTTGATGGCGGACTACGCCCACCGCG
ATACGGCGCTGGAAATCCGCCAGGAAAGCGCTGGTTACAGCCTGCAATTGCGCCAAAACCTGGCGGCCTTAGTGCAAGAA
CTGGTTCCTGTGGACCTCAGCACCGCCAGCCTGCGGACCCTGGCCACGGTGGCGCTGAAAAAAAGGATCCTGCAATCGGA
GCTGGTGGACCTTCGCGGCAGTGGGGCCTACGACCACATCAAAGAGCTGCTCCAGCACGGCTTCATCGAACGCAAACGCC
AGAGCGAAGGGCGTTCGTTTTGGATCAGCCTCACCGAAAAATTTCATCGCACCTTTGCCTTAAACAACGTCAGCGCCGAA
GCGGCGTAG

Upstream 100 bases:

>100_bases
GGTTTTGGCTGGGCTGCCCTTCCAAAGCTGGGAGGAGACCAATAACCCCGCCTATCAGCTTTTCCTGGCCTGAGGCAAAA
ACGACCGCTACGTTGCGCCA

Downstream 100 bases:

>100_bases
CAGAAGCAGCACATAAAAACAGCCTGAAGTTCGTACTTTCACATTCCTCAACGCAAATTTTCTTTGAGGTAATTCAAGTT
TGATTGCCCGGCGATGTTGT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 162; Mature: 162

Protein sequence:

>162_residues
MVSTELSLPAQLEAILYLKGRCLSLAELSELAGCERDEVELALITLMADYAHRDTALEIRQESAGYSLQLRQNLAALVQE
LVPVDLSTASLRTLATVALKKRILQSELVDLRGSGAYDHIKELLQHGFIERKRQSEGRSFWISLTEKFHRTFALNNVSAE
AA

Sequences:

>Translated_162_residues
MVSTELSLPAQLEAILYLKGRCLSLAELSELAGCERDEVELALITLMADYAHRDTALEIRQESAGYSLQLRQNLAALVQE
LVPVDLSTASLRTLATVALKKRILQSELVDLRGSGAYDHIKELLQHGFIERKRQSEGRSFWISLTEKFHRTFALNNVSAE
AA
>Mature_162_residues
MVSTELSLPAQLEAILYLKGRCLSLAELSELAGCERDEVELALITLMADYAHRDTALEIRQESAGYSLQLRQNLAALVQE
LVPVDLSTASLRTLATVALKKRILQSELVDLRGSGAYDHIKELLQHGFIERKRQSEGRSFWISLTEKFHRTFALNNVSAE
AA

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 18069; Mature: 18069

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSTELSLPAQLEAILYLKGRCLSLAELSELAGCERDEVELALITLMADYAHRDTALEIR
CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHH
QESAGYSLQLRQNLAALVQELVPVDLSTASLRTLATVALKKRILQSELVDLRGSGAYDHI
HCCCCCEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
KELLQHGFIERKRQSEGRSFWISLTEKFHRTFALNNVSAEAA
HHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MVSTELSLPAQLEAILYLKGRCLSLAELSELAGCERDEVELALITLMADYAHRDTALEIR
CCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHH
QESAGYSLQLRQNLAALVQELVPVDLSTASLRTLATVALKKRILQSELVDLRGSGAYDHI
HCCCCCEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
KELLQHGFIERKRQSEGRSFWISLTEKFHRTFALNNVSAEAA
HHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA