| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
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The map label for this gene is pstS [H]
Identifier: 148242460
GI number: 148242460
Start: 1207551
End: 1208537
Strand: Direct
Name: pstS [H]
Synonym: SynRCC307_1361
Alternate gene names: 148242460
Gene position: 1207551-1208537 (Clockwise)
Preceding gene: 148242455
Following gene: 148242461
Centisome position: 54.27
GC content: 60.69
Gene sequence:
>987_bases ATGTTCATGTCCAAGAAGACCGTTGCCCTCGGCGCCATCGCAGCTCTGGCTGCTGGTGCTGCTGCTCCGGCCATCGCCCA ACAGCAAATCAACGGCTCCGGGGCTTCCTTCCCCGCACCGATGTTTGCGACCTGGTTCGACAGCCTGCGCAGCCAAGACG GTCCCAATGTCACCTATGAGCCGGTGAATTCTGCTCAAGGCATCCGCCAGCTGGTTGAGCTGGAAGTTGACTTCGGCGCC ACCGATCGTCCGATCGCCCCTCGCACCGCCAACCTGGTGCGCCGCGGTCTGGTGCAAATCCCTGTCGTCGCTGGCTCCAT CGCCATCGGCTACAACAAAGACGGTTGCGATCTGAAGCTGAGCCAGCAGCAGCTCAGCAAGGTGCTGCTTGGCACCATCA ACAACTGGAAGACCCTGGGTTGCCAGGAAGGCCCCATCAAGGTGAGCACCCGTTCGGATCGCTCCGGCACCACCTTGGCC CTGACCAAGAGCCTCTCTGACTGGAGCCCTGAGTTCCGTCAGACCGTTGGCACCGGCATGCGCGTCAAGTTCCCCGTTGG CACCACCTCCAACGGCAACGAAGGCGTGCGTCGCTTCATCGAAACCACCCCTGGCTCGATCGGCTACGTGAACGTGCCCT CTATCAAGGGGAAAGTTCAAGCTGCTGCTCTGCAGAACAGCGAAGGTAACTACATGCTGCCGAATTCCGCCACCGGCATC GCCGCCCTGGAAGGCATTCGCGCCGCTGAGTACAAGCCTCTGGCCATCAGCAACCCTCCTGGCCGGGATTCCTATCCCTT GGTGGCCATGAGCTGGGTCCTGGCTTACGAGAACGGCAACGGTGTCAACACCGATGCTCTCAAGCAGACCTTCAACTACA TGTTGAGCAACCCCGCCCAGAGCCAAGCCGACAACCTCGGCTATGTGCCCCTGCCTGAGACCATCCGCAAGGCAGCTCTC GATCAGGTTCAACTGATCAAGCAGTAA
Upstream 100 bases:
>100_bases CTTTTGATGATTAGCTCTTAGTGTCGCTAACCAGTCTTTAACTGCGACTTAACAGACGATCCATATCACCGTTGTTGACC CAATACTTTTTTGGTCGCCC
Downstream 100 bases:
>100_bases AGCGCTGAGCGCTAACACTCCTGACGGCCCCCAAGGGGGGCCGTTTTCTTATGGCTGAGTAAAGCCTTAATTTCCCTGTA ACCATTGATACAAAAGAGAT
Product: ABC-type phosphate transport system, substrate binding protein
Products: ADP; phosphate [Cytoplasm]; phosphate [Cytoplasm] [C]
Alternate protein names: PBP [H]
Number of amino acids: Translated: 328; Mature: 328
Protein sequence:
>328_residues MFMSKKTVALGAIAALAAGAAAPAIAQQQINGSGASFPAPMFATWFDSLRSQDGPNVTYEPVNSAQGIRQLVELEVDFGA TDRPIAPRTANLVRRGLVQIPVVAGSIAIGYNKDGCDLKLSQQQLSKVLLGTINNWKTLGCQEGPIKVSTRSDRSGTTLA LTKSLSDWSPEFRQTVGTGMRVKFPVGTTSNGNEGVRRFIETTPGSIGYVNVPSIKGKVQAAALQNSEGNYMLPNSATGI AALEGIRAAEYKPLAISNPPGRDSYPLVAMSWVLAYENGNGVNTDALKQTFNYMLSNPAQSQADNLGYVPLPETIRKAAL DQVQLIKQ
Sequences:
>Translated_328_residues MFMSKKTVALGAIAALAAGAAAPAIAQQQINGSGASFPAPMFATWFDSLRSQDGPNVTYEPVNSAQGIRQLVELEVDFGA TDRPIAPRTANLVRRGLVQIPVVAGSIAIGYNKDGCDLKLSQQQLSKVLLGTINNWKTLGCQEGPIKVSTRSDRSGTTLA LTKSLSDWSPEFRQTVGTGMRVKFPVGTTSNGNEGVRRFIETTPGSIGYVNVPSIKGKVQAAALQNSEGNYMLPNSATGI AALEGIRAAEYKPLAISNPPGRDSYPLVAMSWVLAYENGNGVNTDALKQTFNYMLSNPAQSQADNLGYVPLPETIRKAAL DQVQLIKQ >Mature_328_residues MFMSKKTVALGAIAALAAGAAAPAIAQQQINGSGASFPAPMFATWFDSLRSQDGPNVTYEPVNSAQGIRQLVELEVDFGA TDRPIAPRTANLVRRGLVQIPVVAGSIAIGYNKDGCDLKLSQQQLSKVLLGTINNWKTLGCQEGPIKVSTRSDRSGTTLA LTKSLSDWSPEFRQTVGTGMRVKFPVGTTSNGNEGVRRFIETTPGSIGYVNVPSIKGKVQAAALQNSEGNYMLPNSATGI AALEGIRAAEYKPLAISNPPGRDSYPLVAMSWVLAYENGNGVNTDALKQTFNYMLSNPAQSQADNLGYVPLPETIRKAAL DQVQLIKQ
Specific function: Part of the ABC transporter complex pstSACB involved in phosphate import [H]
COG id: COG0226
COG function: function code P; ABC-type phosphate transport system, periplasmic component
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pstS family [H]
Homologues:
Organism=Escherichia coli, GI2367271, Length=311, Percent_Identity=29.5819935691318, Blast_Score=148, Evalue=6e-37,
Paralogues:
None
Copy number: 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005673 - InterPro: IPR006059 [H]
Pfam domain/function: PF01547 SBP_bac_1 [H]
EC number: NA
Molecular weight: Translated: 34888; Mature: 34888
Theoretical pI: Translated: 9.63; Mature: 9.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFMSKKTVALGAIAALAAGAAAPAIAQQQINGSGASFPAPMFATWFDSLRSQDGPNVTYE CCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEC PVNSAQGIRQLVELEVDFGATDRPIAPRTANLVRRGLVQIPVVAGSIAIGYNKDGCDLKL CCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCHHEEEEEECEEEEECCCCCCCEEE SQQQLSKVLLGTINNWKTLGCQEGPIKVSTRSDRSGTTLALTKSLSDWSPEFRQTVGTGM CHHHHHHHHHHCCCCCEECCCCCCCEEEEECCCCCCCEEEEECCCCCCCHHHHHHHCCCC RVKFPVGTTSNGNEGVRRFIETTPGSIGYVNVPSIKGKVQAAALQNSEGNYMLPNSATGI EEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEEECCCCCEECCCCCCCH AALEGIRAAEYKPLAISNPPGRDSYPLVAMSWVLAYENGNGVNTDALKQTFNYMLSNPAQ HHHHCCHHCCCCCEEECCCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCH SQADNLGYVPLPETIRKAALDQVQLIKQ HHHCCCCCCCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure MFMSKKTVALGAIAALAAGAAAPAIAQQQINGSGASFPAPMFATWFDSLRSQDGPNVTYE CCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEC PVNSAQGIRQLVELEVDFGATDRPIAPRTANLVRRGLVQIPVVAGSIAIGYNKDGCDLKL CCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCHHEEEEEECEEEEECCCCCCCEEE SQQQLSKVLLGTINNWKTLGCQEGPIKVSTRSDRSGTTLALTKSLSDWSPEFRQTVGTGM CHHHHHHHHHHCCCCCEECCCCCCCEEEEECCCCCCCEEEEECCCCCCCHHHHHHHCCCC RVKFPVGTTSNGNEGVRRFIETTPGSIGYVNVPSIKGKVQAAALQNSEGNYMLPNSATGI EEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEEECCCCCEECCCCCCCH AALEGIRAAEYKPLAISNPPGRDSYPLVAMSWVLAYENGNGVNTDALKQTFNYMLSNPAQ HHHHCCHHCCCCCEEECCCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCH SQADNLGYVPLPETIRKAALDQVQLIKQ HHHCCCCCCCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; phosphate [Periplasm]; H2O [C]
Specific reaction: ATP + phosphate [Periplasm] + H2O = ADP + phosphate [Cytoplasm] + phosphate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 6321434; 6365894; 7686882; 9278503; 9298646; 2215649; 9228942; 9671506 [H]