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The map label for this gene is yubA [H]

Identifier: 148242404

GI number: 148242404

Start: 1157107

End: 1158147

Strand: Direct

Name: yubA [H]

Synonym: SynRCC307_1305

Alternate gene names: 148242404

Gene position: 1157107-1158147 (Clockwise)

Preceding gene: 148242403

Following gene: 148242405

Centisome position: 52.01

GC content: 59.17

Gene sequence:

>1041_bases
TTGGATTCAGCCAAAGCTGACGGCCAAATAGCCTTTGGTCGCTGGGTTGGATTCGCAGCGCTGATCGCTGCGGTGGTTCT
GCTCTGGGATCTGCGATTTGTCCTAATAGACCTGTTTGGCTCGGTTGTTCTGGCTGTGGCCTTCTGCACCTTGGTGCGCG
CTGTTCAGAGCCGCCTGGGTTGGCGGCGCTGGCCATCGCTAGCGCTCTCGCTGCTTCTGGTTGTGGTGCTGGTGATCGTT
GTGGTGGTCGCCCTGGTCCCCCCCTTCAGTGCGCAATTCCGGGAGCTGATCGAGCAATTGCCGCAGGCTGCTCAGGCACT
GCAACAACTCATTGGTGGTGATCTGAGCTCAGCAATCCAGAGCAATATCTCCAATCCAGAGAAGTGGAATCTCGCCAACA
GCTTCAGCCGTGTGGTGGAGCTGGCCGGAAACTTCGGCATTGGCCTGGTGCAGCTGGTGTTTGTGGTGGCAGTCGCTCTG
ATGCTCAGTGTTCAGCCAGAGGATTACCGCCAAGTCGCCGTGTTGATGGCGCCTTCCTACTTGCGCCGGCGGATTGCTGG
CGTGCTCGATAGCTGCGGGCAAGCACTCAGCAGTTGGATGGTGGGTGTGCTGATCAGCTCGGTTGCTGTTGGCTTCATGG
CCTTTGTTGGCCTCAGCCTGTTGGGGGTCAAGCTGACCACCGCCAATGCCCTATTGGCGGGAATGCTCAATGTGATCCCC
AACGTTGGCCCCACCTTGAGTGTGGTGTTCCCCATGGCCGTGGCTCTGCTGGACACCCCCTGGATGTCGCTGGCGGTCTT
GGCGCTCTATGTGGTGATCCAAAACTTCGAGAGCTATGTCATCACGCCGTCGGTGATGCATCACCAGGTCAAGTTGCTCC
CGGGGTTGACCCTGGCTGCACAGGGGATCTTCACGGTGATCTTTGGTTTTAAGGGACTCCTATTGGCGCTCCCCTTAGCG
GTCTGCCTGCAGGTGGTGGTGCGTGAGCTCGTCGTTCGCGATGTGCTCGACACCTGGAAGCGCCCGGGGAGGTTCTGCTG
A

Upstream 100 bases:

>100_bases
GGCGTCGCCTTTGCATTGGAGGCCACTTACACCTGGAAGAGCGAGGCTGACTTCCAGCGTTTCATGCGCTTTGCTGAGCG
CTACGCAGCCAGCCACGACC

Downstream 100 bases:

>100_bases
TGGAAGGCCGCAACCTGGTCAGCTGGCCAGCGATTCTCGGCACCTTGGCCCTGGTGGTGCTTGGGCTCTTGGCGTGGGAG
CTGCGCTGGGTCCTCTTGGT

Product: permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 346

Protein sequence:

>346_residues
MDSAKADGQIAFGRWVGFAALIAAVVLLWDLRFVLIDLFGSVVLAVAFCTLVRAVQSRLGWRRWPSLALSLLLVVVLVIV
VVVALVPPFSAQFRELIEQLPQAAQALQQLIGGDLSSAIQSNISNPEKWNLANSFSRVVELAGNFGIGLVQLVFVVAVAL
MLSVQPEDYRQVAVLMAPSYLRRRIAGVLDSCGQALSSWMVGVLISSVAVGFMAFVGLSLLGVKLTTANALLAGMLNVIP
NVGPTLSVVFPMAVALLDTPWMSLAVLALYVVIQNFESYVITPSVMHHQVKLLPGLTLAAQGIFTVIFGFKGLLLALPLA
VCLQVVVRELVVRDVLDTWKRPGRFC

Sequences:

>Translated_346_residues
MDSAKADGQIAFGRWVGFAALIAAVVLLWDLRFVLIDLFGSVVLAVAFCTLVRAVQSRLGWRRWPSLALSLLLVVVLVIV
VVVALVPPFSAQFRELIEQLPQAAQALQQLIGGDLSSAIQSNISNPEKWNLANSFSRVVELAGNFGIGLVQLVFVVAVAL
MLSVQPEDYRQVAVLMAPSYLRRRIAGVLDSCGQALSSWMVGVLISSVAVGFMAFVGLSLLGVKLTTANALLAGMLNVIP
NVGPTLSVVFPMAVALLDTPWMSLAVLALYVVIQNFESYVITPSVMHHQVKLLPGLTLAAQGIFTVIFGFKGLLLALPLA
VCLQVVVRELVVRDVLDTWKRPGRFC
>Mature_346_residues
MDSAKADGQIAFGRWVGFAALIAAVVLLWDLRFVLIDLFGSVVLAVAFCTLVRAVQSRLGWRRWPSLALSLLLVVVLVIV
VVVALVPPFSAQFRELIEQLPQAAQALQQLIGGDLSSAIQSNISNPEKWNLANSFSRVVELAGNFGIGLVQLVFVVAVAL
MLSVQPEDYRQVAVLMAPSYLRRRIAGVLDSCGQALSSWMVGVLISSVAVGFMAFVGLSLLGVKLTTANALLAGMLNVIP
NVGPTLSVVFPMAVALLDTPWMSLAVLALYVVIQNFESYVITPSVMHHQVKLLPGLTLAAQGIFTVIFGFKGLLLALPLA
VCLQVVVRELVVRDVLDTWKRPGRFC

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI87082271, Length=271, Percent_Identity=26.1992619926199, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 37289; Mature: 37289

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSAKADGQIAFGRWVGFAALIAAVVLLWDLRFVLIDLFGSVVLAVAFCTLVRAVQSRLG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
WRRWPSLALSLLLVVVLVIVVVVALVPPFSAQFRELIEQLPQAAQALQQLIGGDLSSAIQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
SNISNPEKWNLANSFSRVVELAGNFGIGLVQLVFVVAVALMLSVQPEDYRQVAVLMAPSY
HCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LRRRIAGVLDSCGQALSSWMVGVLISSVAVGFMAFVGLSLLGVKLTTANALLAGMLNVIP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NVGPTLSVVFPMAVALLDTPWMSLAVLALYVVIQNFESYVITPSVMHHQVKLLPGLTLAA
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHH
QGIFTVIFGFKGLLLALPLAVCLQVVVRELVVRDVLDTWKRPGRFC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MDSAKADGQIAFGRWVGFAALIAAVVLLWDLRFVLIDLFGSVVLAVAFCTLVRAVQSRLG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
WRRWPSLALSLLLVVVLVIVVVVALVPPFSAQFRELIEQLPQAAQALQQLIGGDLSSAIQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
SNISNPEKWNLANSFSRVVELAGNFGIGLVQLVFVVAVALMLSVQPEDYRQVAVLMAPSY
HCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
LRRRIAGVLDSCGQALSSWMVGVLISSVAVGFMAFVGLSLLGVKLTTANALLAGMLNVIP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NVGPTLSVVFPMAVALLDTPWMSLAVLALYVVIQNFESYVITPSVMHHQVKLLPGLTLAA
CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHH
QGIFTVIFGFKGLLLALPLAVCLQVVVRELVVRDVLDTWKRPGRFC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]