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The map label for this gene is psb28 [H]

Identifier: 148242403

GI number: 148242403

Start: 1156788

End: 1157126

Strand: Direct

Name: psb28 [H]

Synonym: SynRCC307_1304

Alternate gene names: 148242403

Gene position: 1156788-1157126 (Clockwise)

Preceding gene: 148242402

Following gene: 148242404

Centisome position: 51.99

GC content: 58.7

Gene sequence:

>339_bases
ATGGGCGCAGCCATTCAGTTTTTCCGTGGCGTTGACGAGCCCGTTATTCCCGACATCAAGTTGACCCGCTCGCGCGATGG
GATGACCGGCCAGGCCAAGTTTGTGTTTGAGGAGCCTCAAGCCTTGGCCCCGGAAACCATGGGCGACATCACCGGCATGT
TCATGGTCGATGAGGAAGGCGAACTGACCAGCCGCGATGTCAACGCGCGCTTTGTCAACGGCGTCGCCTTTGCATTGGAG
GCCACTTACACCTGGAAGAGCGAGGCTGACTTCCAGCGTTTCATGCGCTTTGCTGAGCGCTACGCAGCCAGCCACGACCT
TGGATTCAGCCAAAGCTGA

Upstream 100 bases:

>100_bases
CACCAGGTTGGCGGTTGAGGGCTTAAGTGCGTCTGCCGTGGCACACCAGCTATTGCAGCTGAAATCTGCGTAAGCTCTCC
CTCTTTCGGGGCAGTAAGCG

Downstream 100 bases:

>100_bases
CGGCCAAATAGCCTTTGGTCGCTGGGTTGGATTCGCAGCGCTGATCGCTGCGGTGGTTCTGCTCTGGGATCTGCGATTTG
TCCTAATAGACCTGTTTGGC

Product: photosystem II reaction center protein Psb28

Products: NA

Alternate protein names: Photosystem II 13 kDa protein; Photosystem II reaction center W protein [H]

Number of amino acids: Translated: 112; Mature: 111

Protein sequence:

>112_residues
MGAAIQFFRGVDEPVIPDIKLTRSRDGMTGQAKFVFEEPQALAPETMGDITGMFMVDEEGELTSRDVNARFVNGVAFALE
ATYTWKSEADFQRFMRFAERYAASHDLGFSQS

Sequences:

>Translated_112_residues
MGAAIQFFRGVDEPVIPDIKLTRSRDGMTGQAKFVFEEPQALAPETMGDITGMFMVDEEGELTSRDVNARFVNGVAFALE
ATYTWKSEADFQRFMRFAERYAASHDLGFSQS
>Mature_111_residues
GAAIQFFRGVDEPVIPDIKLTRSRDGMTGQAKFVFEEPQALAPETMGDITGMFMVDEEGELTSRDVNARFVNGVAFALEA
TYTWKSEADFQRFMRFAERYAASHDLGFSQS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psb28 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005610
- ProDom:   PD012692 [H]

Pfam domain/function: PF03912 Psb28 [H]

EC number: NA

Molecular weight: Translated: 12557; Mature: 12426

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGAAIQFFRGVDEPVIPDIKLTRSRDGMTGQAKFVFEEPQALAPETMGDITGMFMVDEEG
CCCCHHHHHCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCC
ELTSRDVNARFVNGVAFALEATYTWKSEADFQRFMRFAERYAASHDLGFSQS
CCCCCCCCCEEECCEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
GAAIQFFRGVDEPVIPDIKLTRSRDGMTGQAKFVFEEPQALAPETMGDITGMFMVDEEG
CCCHHHHHCCCCCCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCC
ELTSRDVNARFVNGVAFALEATYTWKSEADFQRFMRFAERYAASHDLGFSQS
CCCCCCCCCEEECCEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA