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The map label for this gene is yibK [C]

Identifier: 148242334

GI number: 148242334

Start: 1095344

End: 1095802

Strand: Direct

Name: yibK [C]

Synonym: SynRCC307_1235

Alternate gene names: 148242334

Gene position: 1095344-1095802 (Clockwise)

Preceding gene: 148242333

Following gene: 148242335

Centisome position: 49.23

GC content: 53.38

Gene sequence:

>459_bases
ATGCCTCAGATCGTTTTGGTGGAGCCTGAGATTCCGCCCAATACCGGCAATATCGCCCGCACCTGCGCGGCCACAGAGAC
CCCCCTCCACCTGGTGGAACCCTTGGGCTTTGAGATCAATGATCGCCAGTTGAAGCGTGCTGGTTTGGATTACTGGCCCC
ACGTTCCCTTGGTGCAACACTCCAGTTGGGGAGAGTTTTTGAAGCACCATCAGCATCATTCAGGACGCTTGTTGGGGTTC
AGCCGCCATGCCAGCCGCTCCTACCTGGAGATTGATTATCGAGCAGACGACTGGCTGATTTTCGGTTGTGAAACCAAAGG
ATTAGCCCCTGAAGTCCAAGCCAATTGCGATGACCTCCTTCTGATTCCGATGACGTGTTCAGCGGTGAGAAGCCTGAATT
TGTCTGTGGCTGCAGCGGTTGTGCTGTTTGAATCTCGTCGCCAATTAATAAACGGTTAA

Upstream 100 bases:

>100_bases
GCAGTGTGAGCAACTCTGCTCGGAAAGTTGGCTCGTGGCAGCTGGACGCGCCTTGCCTCTCCATCAGCTCGCACAACGCC
TCAATCCCGCACCCTGAGTC

Downstream 100 bases:

>100_bases
AGCATCTGTTTATCTAATGATCGGTGGATTTCATCCCACCTCACCCTTGATCATTTACCTACGAGCAGGTAATTTACGCC
CGATCCCGCCTGAGGGGATT

Product: rRNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 151

Protein sequence:

>152_residues
MPQIVLVEPEIPPNTGNIARTCAATETPLHLVEPLGFEINDRQLKRAGLDYWPHVPLVQHSSWGEFLKHHQHHSGRLLGF
SRHASRSYLEIDYRADDWLIFGCETKGLAPEVQANCDDLLLIPMTCSAVRSLNLSVAAAVVLFESRRQLING

Sequences:

>Translated_152_residues
MPQIVLVEPEIPPNTGNIARTCAATETPLHLVEPLGFEINDRQLKRAGLDYWPHVPLVQHSSWGEFLKHHQHHSGRLLGF
SRHASRSYLEIDYRADDWLIFGCETKGLAPEVQANCDDLLLIPMTCSAVRSLNLSVAAAVVLFESRRQLING
>Mature_151_residues
PQIVLVEPEIPPNTGNIARTCAATETPLHLVEPLGFEINDRQLKRAGLDYWPHVPLVQHSSWGEFLKHHQHHSGRLLGFS
RHASRSYLEIDYRADDWLIFGCETKGLAPEVQANCDDLLLIPMTCSAVRSLNLSVAAAVVLFESRRQLING

Specific function: Could methylate the ribose at the nucleotide 34 wobble position in tRNA [H]

COG id: COG0219

COG function: function code J; Predicted rRNA methylase (SpoU class)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family. TrmL subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790034, Length=151, Percent_Identity=41.0596026490066, Blast_Score=113, Evalue=5e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004440
- InterPro:   IPR016914
- InterPro:   IPR001537 [H]

Pfam domain/function: PF00588 SpoU_methylase [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 17046; Mature: 16914

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQIVLVEPEIPPNTGNIARTCAATETPLHLVEPLGFEINDRQLKRAGLDYWPHVPLVQH
CCCEEEECCCCCCCCCCEEEEECCCCCCHHHHCCCCCCCCHHHHHHCCCCCCCCCCEEEC
SSWGEFLKHHQHHSGRLLGFSRHASRSYLEIDYRADDWLIFGCETKGLAPEVQANCDDLL
CCHHHHHHHHCCCCCCEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCEE
LIPMTCSAVRSLNLSVAAAVVLFESRRQLING
EECCCHHHHHHCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PQIVLVEPEIPPNTGNIARTCAATETPLHLVEPLGFEINDRQLKRAGLDYWPHVPLVQH
CCEEEECCCCCCCCCCEEEEECCCCCCHHHHCCCCCCCCHHHHHHCCCCCCCCCCEEEC
SSWGEFLKHHQHHSGRLLGFSRHASRSYLEIDYRADDWLIFGCETKGLAPEVQANCDDLL
CCHHHHHHHHCCCCCCEEEEECCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCEE
LIPMTCSAVRSLNLSVAAAVVLFESRRQLING
EECCCHHHHHHCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]