Click here to switch to the map view.

The map label for this gene is ygcA [C]

Identifier: 148242321

GI number: 148242321

Start: 1081030

End: 1082397

Strand: Direct

Name: ygcA [C]

Synonym: SynRCC307_1222

Alternate gene names: 148242321

Gene position: 1081030-1082397 (Clockwise)

Preceding gene: 148242319

Following gene: 148242323

Centisome position: 48.59

GC content: 58.85

Gene sequence:

>1368_bases
ATGCCTGTTGATGCCAGCCATCCCAACCAGCTGACGCTGGAGATCAAAGATCTCGCCCTCGACGGGACCGGCCTTGCTCA
ACACGACGGCAAGTTGGTCTTTGTTTCAGGCGCTCTGCCGGCAGAAACCGCCACGGTTCGAATCACAGGGCAAGGACGGG
GCAAGCTTCACGGGGAGATCAGCGAGCTCACGTGCTCGAGCCCTGATCGGCGTGATCCCGTCTGCATCCTTGCCGGCAAA
TGTGGTGGCTGCAGCCTGTTGCATTGGCAAGACCAGGCCCAGAGCGAGTGGAAACAGCAGCAGCTGCAAAACACCCTGCG
TCGTGTGGGACGTTTGGAATGTTTGGTGGAGCCCATCCGCTCAACCCAGGCGGTGTTGGGCTATCGCAACCGCGCCATCA
TCCCGGTGCAGGAGCGGGATAACTCCTTAAAAGCTGGTTTTTTTCAACGCGGCAGTCACCAGGTGGTGAACATGAACCAC
TGCCCCGTTCTCGACCCCAGGCTGGATGCCTTGATCGAGCCGCTCAAAGCAGATCTTCAAGCCGCCGGCTGGCCGATCTA
CAACGAGGACACCCAAAAGGGTTTGTTGCGTCAGTTGGTGCTGCGAGCCGGAGTCTCCAGCGGTGAAGTGTTGCTTGGGG
TGGTCGTTCGCGACGATCAGTTTCAAGGGGCACAGGAGTTGGCTGAGCAGTGGATGCAGCGCTGGCCCGAACTGGTGGGT
GTTGTGCTGAACGTGCAACCCAAACCAGGCAACACCCTGCTCGGCCCAAAAGAAAGGCTTCTGGCTGGTCGGCCCTGGTT
GATGGAAAGCTTTGCAGGACGCCGCTTCCAAATCGGTTTAGGCACTTTTTTTCAAGTGCACCACCAGCAAGCGGAAGCGC
TGGTGGATGCGTTGCGTAGCGAGCTTCAACTCCAATCCGGGGAGGTGTTGGTCGATGCCTATTGCGGTGTGGGCACCCTT
GGACTCCCGTTAATCCAAGAGGGTGTTCGTCTGATTGGCATTGAGCAAAGCCGCGAAAGCATTGAGCGGGCTCAATGCAA
TGCCCTGCTCAATGGACTGGAAGACACGGACTTCCATGCCGGTTCTGTCGAGCGCCGGCTGCAGGAATTCCTGCCTTTTA
CCGATGTGCTGCTCCTCGATCCACCGCGCAAGGGATTGGATGCCCGGGTGTGTGAGGCGATCAGGGAGCAACCACCAGCA
CGCATGGCCTATGTCAGCTGCAATCCAGCCACCTTGGCCCGCGACCTAGCGCTCCTCTGCGCCGACCAGCGTTTTGAGCT
GACGAAGGTGGTGCCGTTTGATTTCTTCCCGCAAACCACCCACATCGAGGCGATGGCAATCCTGACTAGCAGCGCAGCTC
AGCTTTGA

Upstream 100 bases:

>100_bases
CAACACCTTGGCCGCCGCCACTTTACTGAGCTCAACTCGCCTCTGGCTGCCGAACAGCAGAAACCACGCGAGCTGTAATG
CCCAGCGGTAGCGTCAAGGG

Downstream 100 bases:

>100_bases
AACTTTTTTCCAAGCTTTGACGAACCTTGTTGAGCAGGGGATCGACCTGCTCATCGCGCAGGGTTGCTTTGGGGTCACGG
AAGCGCAGACGCACAGCCAG

Product: putative RNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 455; Mature: 454

Protein sequence:

>455_residues
MPVDASHPNQLTLEIKDLALDGTGLAQHDGKLVFVSGALPAETATVRITGQGRGKLHGEISELTCSSPDRRDPVCILAGK
CGGCSLLHWQDQAQSEWKQQQLQNTLRRVGRLECLVEPIRSTQAVLGYRNRAIIPVQERDNSLKAGFFQRGSHQVVNMNH
CPVLDPRLDALIEPLKADLQAAGWPIYNEDTQKGLLRQLVLRAGVSSGEVLLGVVVRDDQFQGAQELAEQWMQRWPELVG
VVLNVQPKPGNTLLGPKERLLAGRPWLMESFAGRRFQIGLGTFFQVHHQQAEALVDALRSELQLQSGEVLVDAYCGVGTL
GLPLIQEGVRLIGIEQSRESIERAQCNALLNGLEDTDFHAGSVERRLQEFLPFTDVLLLDPPRKGLDARVCEAIREQPPA
RMAYVSCNPATLARDLALLCADQRFELTKVVPFDFFPQTTHIEAMAILTSSAAQL

Sequences:

>Translated_455_residues
MPVDASHPNQLTLEIKDLALDGTGLAQHDGKLVFVSGALPAETATVRITGQGRGKLHGEISELTCSSPDRRDPVCILAGK
CGGCSLLHWQDQAQSEWKQQQLQNTLRRVGRLECLVEPIRSTQAVLGYRNRAIIPVQERDNSLKAGFFQRGSHQVVNMNH
CPVLDPRLDALIEPLKADLQAAGWPIYNEDTQKGLLRQLVLRAGVSSGEVLLGVVVRDDQFQGAQELAEQWMQRWPELVG
VVLNVQPKPGNTLLGPKERLLAGRPWLMESFAGRRFQIGLGTFFQVHHQQAEALVDALRSELQLQSGEVLVDAYCGVGTL
GLPLIQEGVRLIGIEQSRESIERAQCNALLNGLEDTDFHAGSVERRLQEFLPFTDVLLLDPPRKGLDARVCEAIREQPPA
RMAYVSCNPATLARDLALLCADQRFELTKVVPFDFFPQTTHIEAMAILTSSAAQL
>Mature_454_residues
PVDASHPNQLTLEIKDLALDGTGLAQHDGKLVFVSGALPAETATVRITGQGRGKLHGEISELTCSSPDRRDPVCILAGKC
GGCSLLHWQDQAQSEWKQQQLQNTLRRVGRLECLVEPIRSTQAVLGYRNRAIIPVQERDNSLKAGFFQRGSHQVVNMNHC
PVLDPRLDALIEPLKADLQAAGWPIYNEDTQKGLLRQLVLRAGVSSGEVLLGVVVRDDQFQGAQELAEQWMQRWPELVGV
VLNVQPKPGNTLLGPKERLLAGRPWLMESFAGRRFQIGLGTFFQVHHQQAEALVDALRSELQLQSGEVLVDAYCGVGTLG
LPLIQEGVRLIGIEQSRESIERAQCNALLNGLEDTDFHAGSVERRLQEFLPFTDVLLLDPPRKGLDARVCEAIREQPPAR
MAYVSCNPATLARDLALLCADQRFELTKVVPFDFFPQTTHIEAMAILTSSAAQL

Specific function: Could Be A 23s rRNA (Uracil-5-)-Methyltransferase. [C]

COG id: COG2265

COG function: function code J; SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TRAM domain [H]

Homologues:

Organism=Homo sapiens, GI34222389, Length=364, Percent_Identity=27.7472527472527, Blast_Score=112, Evalue=5e-25,
Organism=Homo sapiens, GI51173878, Length=364, Percent_Identity=27.7472527472527, Blast_Score=112, Evalue=5e-25,
Organism=Homo sapiens, GI269784680, Length=370, Percent_Identity=24.8648648648649, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI269784676, Length=370, Percent_Identity=24.8648648648649, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI20149688, Length=370, Percent_Identity=24.8648648648649, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI269784678, Length=207, Percent_Identity=30.4347826086957, Blast_Score=100, Evalue=4e-21,
Organism=Escherichia coli, GI1789148, Length=451, Percent_Identity=29.7117516629712, Blast_Score=163, Evalue=2e-41,
Organism=Escherichia coli, GI1787083, Length=375, Percent_Identity=26.6666666666667, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1790403, Length=156, Percent_Identity=29.4871794871795, Blast_Score=72, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI71997438, Length=161, Percent_Identity=34.7826086956522, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24666579, Length=361, Percent_Identity=24.3767313019391, Blast_Score=100, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016027
- InterPro:   IPR001566
- InterPro:   IPR002792
- InterPro:   IPR010280 [H]

Pfam domain/function: PF01938 TRAM; PF05958 tRNA_U5-meth_tr [H]

EC number: NA

Molecular weight: Translated: 50211; Mature: 50080

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: PS50926 TRAM ; PS01231 TRMA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVDASHPNQLTLEIKDLALDGTGLAQHDGKLVFVSGALPAETATVRITGQGRGKLHGEI
CCCCCCCCCEEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCH
SELTCSSPDRRDPVCILAGKCGGCSLLHWQDQAQSEWKQQQLQNTLRRVGRLECLVEPIR
HHHCCCCCCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
STQAVLGYRNRAIIPVQERDNSLKAGFFQRGSHQVVNMNHCPVLDPRLDALIEPLKADLQ
HHHHHHCCCCCEEEEECCCCCCCHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHH
AAGWPIYNEDTQKGLLRQLVLRAGVSSGEVLLGVVVRDDQFQGAQELAEQWMQRWPELVG
HCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHEE
VVLNVQPKPGNTLLGPKERLLAGRPWLMESFAGRRFQIGLGTFFQVHHQQAEALVDALRS
EEEEECCCCCCCCCCCHHHHHCCCCHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHH
ELQLQSGEVLVDAYCGVGTLGLPLIQEGVRLIGIEQSRESIERAQCNALLNGLEDTDFHA
HHHHCCCCEEEEECCCCCCCCHHHHHCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCC
GSVERRLQEFLPFTDVLLLDPPRKGLDARVCEAIREQPPARMAYVSCNPATLARDLALLC
CHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
ADQRFELTKVVPFDFFPQTTHIEAMAILTSSAAQL
CCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
PVDASHPNQLTLEIKDLALDGTGLAQHDGKLVFVSGALPAETATVRITGQGRGKLHGEI
CCCCCCCCEEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCH
SELTCSSPDRRDPVCILAGKCGGCSLLHWQDQAQSEWKQQQLQNTLRRVGRLECLVEPIR
HHHCCCCCCCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
STQAVLGYRNRAIIPVQERDNSLKAGFFQRGSHQVVNMNHCPVLDPRLDALIEPLKADLQ
HHHHHHCCCCCEEEEECCCCCCCHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHH
AAGWPIYNEDTQKGLLRQLVLRAGVSSGEVLLGVVVRDDQFQGAQELAEQWMQRWPELVG
HCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHEE
VVLNVQPKPGNTLLGPKERLLAGRPWLMESFAGRRFQIGLGTFFQVHHQQAEALVDALRS
EEEEECCCCCCCCCCCHHHHHCCCCHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHH
ELQLQSGEVLVDAYCGVGTLGLPLIQEGVRLIGIEQSRESIERAQCNALLNGLEDTDFHA
HHHHCCCCEEEEECCCCCCCCHHHHHCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCC
GSVERRLQEFLPFTDVLLLDPPRKGLDARVCEAIREQPPARMAYVSCNPATLARDLALLC
CHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
ADQRFELTKVVPFDFFPQTTHIEAMAILTSSAAQL
CCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]