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The map label for this gene is dacB [H]

Identifier: 148242293

GI number: 148242293

Start: 1052188

End: 1053507

Strand: Direct

Name: dacB [H]

Synonym: SynRCC307_1194

Alternate gene names: 148242293

Gene position: 1052188-1053507 (Clockwise)

Preceding gene: 148242292

Following gene: 148242296

Centisome position: 47.29

GC content: 61.21

Gene sequence:

>1320_bases
ATGGGCAAGCGTCTTTGCTTCGCCGCCTTGGCGTTGTTGATTCCTGCTGCGGTGCAAGCCCAAGGTCTCGAATCGCTGCT
CAGCAGCATCGAAGAGGACAACGAAAACAAGCTCAATCCTGTGGCGGAGCATCCGCCCCTCACCCCGCCCCCGTTCTTGG
CACCAGTGGGGCTTCCGCTGCAGCAGGCCAGCACCATTTGCCCTGCGCTTCAGAAAGCCGTTGTGGCCGCCACCGGAGCG
GAGTCGGGTGTCTGGAGCATCACCGTGGCCGATCGCAACGGCATGGTCTTGGCCGATTTGCATGGCAACAAGTCGCGCAT
TCCCGCCTCGAACCAAAAGCTGATCAGCACCGCGATCGCCATGGATCGCCTCGGCCCCAACCACCGCATCAGCACGGAGC
TCTGGCGCTTGCCCAATGGCACCTTCCGCATCCAAGGCGGTGGTGATCCCACCTTTGGCTTTAGTGGATTGCGCCGCTTT
GCCAAGTTGGCTGCTGGTTCTGGAGGAGGCAGCTCCACCAGCTCAGGCACCGTGAAATTGCAGCTGGAGGAAGAACATGC
TTCCCGCTGGTGGCCCCAGGGCTGGTCGCAACCTGATCGCAGCTATGCCTATGGCGCACCGATCACCCGTCTGGCGGTGA
CCTCAAATGCTGTGGATCTCTCGGTTCGCAACCCGCCTCAGCGTCTCAAGCGCTTGCTCAATAGTGAGATTTATCGCAAC
GGCGCCAACGCTGAGATCAGCACGATCCCTGCGGGCACCCCTGAACCCGCCGGCAGCGTTTTGCTGCACAGCGAGTCATC
GAAGTCGATGCATCACCTCATGAGCCTGGCCAATGGGGAAAGCCATAACTTCACGGCCGAGGTGTTGTTGCGTGAAGGCA
CGGGTTCTTGGTCCCTACCGGAAGCCCAACGGCGAGCCATGTCATGGATGCGCCAACAGGGGCTCCCCATCGCAGGGGTA
CGCGTCGCCGATGGTTCCGGGCTTGACCGTGCCAACCGCGTCACCAGCCGACTGTTAACAGCTTTGATGTTGCGGATGGA
GCAGCACCCCTACGCCAAAAACTATTACGCGAGCATGGCCGTCGCCGGTGAGCGGGGAACCCTCCGCTACTACTTCCAGG
GCTCACCACTGAAGGGACGTTTCCGCGGCAAAACCGGCACGATTAGCGGCGTGAAAGCGGTGAGCGGCAAGCTCGACACC
AACAACGGTCCGCTTTACGTGAGCATGATTTCCAACGGATCCTGGGGACCGGTTGGGGTGATGCAGCGGGTGCTGATGGC
CAGCCTCAAGCAGAGCGGCTGCCGTCCCGTGTCTCTTTAA

Upstream 100 bases:

>100_bases
TGGGTAACCAGGCGCTCAAAATCGGTTCCCACGTTGAGCTGGAAGGCCCCACTTACCGCATCAAAGGCATGGTGAGCGGC
ATCCAGCTGGAGGGCTTGTG

Downstream 100 bases:

>100_bases
CCCGCCGCGCGGAACGACGCACCCGGTTGATCGGCACGGTTTTGTTCTCGTTGTTTTCGGGCTGGGTGAGTTCCACATCG
GTGTTTTGAAGGCGCACCAA

Product: D-alanyl-D-alanine carboxypeptidase

Products: NA

Alternate protein names: DD-carboxypeptidase; DD-peptidase; Penicillin-binding protein; PBP [H]

Number of amino acids: Translated: 439; Mature: 438

Protein sequence:

>439_residues
MGKRLCFAALALLIPAAVQAQGLESLLSSIEEDNENKLNPVAEHPPLTPPPFLAPVGLPLQQASTICPALQKAVVAATGA
ESGVWSITVADRNGMVLADLHGNKSRIPASNQKLISTAIAMDRLGPNHRISTELWRLPNGTFRIQGGGDPTFGFSGLRRF
AKLAAGSGGGSSTSSGTVKLQLEEEHASRWWPQGWSQPDRSYAYGAPITRLAVTSNAVDLSVRNPPQRLKRLLNSEIYRN
GANAEISTIPAGTPEPAGSVLLHSESSKSMHHLMSLANGESHNFTAEVLLREGTGSWSLPEAQRRAMSWMRQQGLPIAGV
RVADGSGLDRANRVTSRLLTALMLRMEQHPYAKNYYASMAVAGERGTLRYYFQGSPLKGRFRGKTGTISGVKAVSGKLDT
NNGPLYVSMISNGSWGPVGVMQRVLMASLKQSGCRPVSL

Sequences:

>Translated_439_residues
MGKRLCFAALALLIPAAVQAQGLESLLSSIEEDNENKLNPVAEHPPLTPPPFLAPVGLPLQQASTICPALQKAVVAATGA
ESGVWSITVADRNGMVLADLHGNKSRIPASNQKLISTAIAMDRLGPNHRISTELWRLPNGTFRIQGGGDPTFGFSGLRRF
AKLAAGSGGGSSTSSGTVKLQLEEEHASRWWPQGWSQPDRSYAYGAPITRLAVTSNAVDLSVRNPPQRLKRLLNSEIYRN
GANAEISTIPAGTPEPAGSVLLHSESSKSMHHLMSLANGESHNFTAEVLLREGTGSWSLPEAQRRAMSWMRQQGLPIAGV
RVADGSGLDRANRVTSRLLTALMLRMEQHPYAKNYYASMAVAGERGTLRYYFQGSPLKGRFRGKTGTISGVKAVSGKLDT
NNGPLYVSMISNGSWGPVGVMQRVLMASLKQSGCRPVSL
>Mature_438_residues
GKRLCFAALALLIPAAVQAQGLESLLSSIEEDNENKLNPVAEHPPLTPPPFLAPVGLPLQQASTICPALQKAVVAATGAE
SGVWSITVADRNGMVLADLHGNKSRIPASNQKLISTAIAMDRLGPNHRISTELWRLPNGTFRIQGGGDPTFGFSGLRRFA
KLAAGSGGGSSTSSGTVKLQLEEEHASRWWPQGWSQPDRSYAYGAPITRLAVTSNAVDLSVRNPPQRLKRLLNSEIYRNG
ANAEISTIPAGTPEPAGSVLLHSESSKSMHHLMSLANGESHNFTAEVLLREGTGSWSLPEAQRRAMSWMRQQGLPIAGVR
VADGSGLDRANRVTSRLLTALMLRMEQHPYAKNYYASMAVAGERGTLRYYFQGSPLKGRFRGKTGTISGVKAVSGKLDTN
NGPLYVSMISNGSWGPVGVMQRVLMASLKQSGCRPVSL

Specific function: Removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors [H]

COG id: COG2027

COG function: function code M; D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4)

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S13 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012338
- InterPro:   IPR000667 [H]

Pfam domain/function: PF02113 Peptidase_S13 [H]

EC number: =3.4.16.4 [H]

Molecular weight: Translated: 47025; Mature: 46894

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKRLCFAALALLIPAAVQAQGLESLLSSIEEDNENKLNPVAEHPPLTPPPFLAPVGLPL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
QQASTICPALQKAVVAATGAESGVWSITVADRNGMVLADLHGNKSRIPASNQKLISTAIA
HHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHH
MDRLGPNHRISTELWRLPNGTFRIQGGGDPTFGFSGLRRFAKLAAGSGGGSSTSSGTVKL
HHHCCCCCCCCHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEE
QLEEEHASRWWPQGWSQPDRSYAYGAPITRLAVTSNAVDLSVRNPPQRLKRLLNSEIYRN
EEEHHHHCCCCCCCCCCCCCCEECCCCCEEEEEECCCEEEEECCCHHHHHHHHHHHHHCC
GANAEISTIPAGTPEPAGSVLLHSESSKSMHHLMSLANGESHNFTAEVLLREGTGSWSLP
CCCCEEEECCCCCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCC
EAQRRAMSWMRQQGLPIAGVRVADGSGLDRANRVTSRLLTALMLRMEQHPYAKNYYASMA
HHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHEEEEE
VAGERGTLRYYFQGSPLKGRFRGKTGTISGVKAVSGKLDTNNGPLYVSMISNGSWGPVGV
EECCCCCEEEEEECCCCCCEECCCCCCCCCHHHHCCEEECCCCCEEEEEECCCCCCHHHH
MQRVLMASLKQSGCRPVSL
HHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
GKRLCFAALALLIPAAVQAQGLESLLSSIEEDNENKLNPVAEHPPLTPPPFLAPVGLPL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
QQASTICPALQKAVVAATGAESGVWSITVADRNGMVLADLHGNKSRIPASNQKLISTAIA
HHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHH
MDRLGPNHRISTELWRLPNGTFRIQGGGDPTFGFSGLRRFAKLAAGSGGGSSTSSGTVKL
HHHCCCCCCCCHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEE
QLEEEHASRWWPQGWSQPDRSYAYGAPITRLAVTSNAVDLSVRNPPQRLKRLLNSEIYRN
EEEHHHHCCCCCCCCCCCCCCEECCCCCEEEEEECCCEEEEECCCHHHHHHHHHHHHHCC
GANAEISTIPAGTPEPAGSVLLHSESSKSMHHLMSLANGESHNFTAEVLLREGTGSWSLP
CCCCEEEECCCCCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCC
EAQRRAMSWMRQQGLPIAGVRVADGSGLDRANRVTSRLLTALMLRMEQHPYAKNYYASMA
HHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHEEEEE
VAGERGTLRYYFQGSPLKGRFRGKTGTISGVKAVSGKLDTNNGPLYVSMISNGSWGPVGV
EECCCCCEEEEEECCCCCCEECCCCCCCCCHHHHCCEEECCCCCEEEEEECCCCCCHHHH
MQRVLMASLKQSGCRPVSL
HHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1554361; 7305936 [H]