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The map label for this gene is mscS [C]

Identifier: 148242246

GI number: 148242246

Start: 1013480

End: 1015666

Strand: Direct

Name: mscS [C]

Synonym: SynRCC307_1147

Alternate gene names: 148242246

Gene position: 1013480-1015666 (Clockwise)

Preceding gene: 148242245

Following gene: 148242250

Centisome position: 45.55

GC content: 47.55

Gene sequence:

>2187_bases
GTGATCAAGCGTCAGTTTTTGCGATCATTCTTGCTCGGACTGGTTTGTGTCTTTGTCTTTTCAGGACTGCCATCGTTGGC
AGCGCTGAAGTCCACCGACTCAACTTCAATCAATTCCAAATACGAGAGCTCGTATCCTGTTATACCGATTGAAGAGCAGC
CCTTTTACGAAGAATTGGTTAGTCGCGCTGATCTTTGGTTGCACACCCCTCTTGGTCAGGTGGTTGGCAATAGTCCAAGA
GATACGTTGCTTAATTTCTATGCTGTGATGGCCGATGTTGGCATTGTGATTGACGATGTCACGGCTGCGCATATTAACGA
TCCGGGCTGGTTTTGGGATCGCCAGACATTGGCTGAGATGGAAGAAGCCGAAGAGCTGTTCAGCGCTGCAGTGGCGTCGC
TTGATGCTTCCCTATTCCCGCAGGCTGTTCGTCCCTATTTGGCCGATGAGGCGGCGATCCAGCTGAAGCATGTCCTTGAT
TATGTGTTCCATAACAGCCGGCAGGAATTAACCATTCCTGATGCCAGCGGCATGAGGGTGATTAACGACGGTCGTAGCAA
AGACACACAGTCATGGACGCTTCCTGGCTCATCCATCGTTATGACCAGTCAGCTGGCTGATGACCCTGTTAACACGGATT
ACTTCTTTTCAGCTGAAACTGTTCTGTCGGCAGCTCAGATGTATGACCATATTCGTTTACAGGCTGAGGAATTAGCCGCT
GAGCCTTTTGTTGCCGCCACTTTTTACCAAGACTTTATTCACACTCCAGGTCACCTTTTCCCTCCTAAGTGGTATCTAAT
GATGCCGAAGCCTTTAAGAGGAGCTTTTGAGACAGAGGTATTGCTGGGTGAGACATTGTTCCAGGTAGCGCTGTCAATCA
TCGCTGTTGCTTTGTTTGCGCTTGTCTCGTTAAAGCTTATTCAAAACTTGGTTTTGTCCTATCGAGATCACGCGCCGTCA
AGGGACGATTTGCAGGGTATCTGGATGCTTGATGGTATCGCTTGGAAAAGGGTGTTAATTGTCCTTCCAATTCTGCCTTT
GACCAAGCTAACAGAGCTGTTTGTGGATGAATATCTGAACTTTACTGGTGTTCCGCTGCTTGTATTCACCATTGTGTTTG
AGGTCCTATTTTTTGGGATTTGCATTGTTTTCTCCTTCCTCTTTTTTGAAGCTCTTGGGCGATCGTTGTCAGAGGCATTC
GTCAAATTTAGCGGCAGTCATGAGTCCTGGAAGTTATTGCGCACAAGCAATCGGATCATGCCTTTGTGTCGCATCAGTGC
CGGCATTATTTCGATCTTTTTGATTTACAACATGCTTCTGCAGCTTGGCCTTTCTCCAACTTTGGTGCTTGCTCTTTCCA
CTGTTCCTGGCTTGGCCATTGGCCTTGGGGCCTCAAAGCTGCTTAGCAATTTATTTGCCGGGCTTTCACTGCAGACTGAT
CGTCCACTGCGTGTTGGAGAATTTTGCGAAATCGGAGGCGATCTGGGTTTCATCAGAAAAATCGGCCTGCGTTCAGTGGA
ACTTCAGACCGTTACTGGGATCGTGACGATTCCTAATTCTGTTGCTGAAGAAACTGTTGTTAATAACTTTTCCCGGAACA
AAACTAATGCTGGATCCGTTCAAAGTCAGGGCCTTGAGTTGCGCATCGATCTGGATCAAGACCCTGCCTTTGGGCCTGAT
CAAATCACAGATCTTTTGGAGCTTGTCCGCCATAATCTCGCCTCATCCGCCGAATTCTCTTGCACCTGTGTAACCGTTGA
AGTTGATAGTGGCGATCAAGCGGTTCTTGTTTGCATTGGTTTGATCAAGGCTCAAGGCTGGTCCGACTATCTTGCGATGA
AAGAGAGAATTGCTGTTCGGCTGAAGCAATTAATTGACCAGGTCGAGCGATCTCACTTTGTCCTGCCGGTTGCCTATGAA
ACCAGTGCAGAAAAGCTGCAAGTCATCCCCAGTCTTTTGCGGTCGGTTGTTGCTGCAAATCCAGGCTTTTCGATGCGCGC
GTGCCGATTGATGGAGATTTCAGAGTTTAGTTACGATTTCAAATGCCACCTTTTTGCTGATGGCATTGACTACAAATGCT
TCAATGATTCGATTGACCGGATCAACAAAGCCATTCTTGCTGAAATGGCGGCTCAACAGATCGTGATCCCTTATCCCACA
GCGATTGAGATTCAAAGAGATGATTGA

Upstream 100 bases:

>100_bases
GACAGGCTGATGGACGCGTTGTTTGGTCCATTCATTCGATCACACATGAGGTGGTGATTGAACTCAACCCAATTACACTG
ATTGGAGCTAATCAGCAAGT

Downstream 100 bases:

>100_bases
TCCATAGTCGTTTTTGTTATCCCTGAGGGCCCGCCCAGTTCTCTTTGATCAGCTGCTTGGCGCGGCCCAGGGCCAAGGCC
CCATCAGGAACGTTTTTGGT

Product: small-conductance mechanosensitive channel

Products: NA

Alternate protein names: Small-Conductance Mechanosensitive Channel; Mechanosensitive Ion Channel Family Protein; Mechanosensitive Ion Channel Protein MscS; Mechanosensitive Ion Channel MscS; Transporter MscS Family; Transmembrane Transporter; Mechanosensitive Ion Channel; Small Conductance Mechanosensitive Ion Channel

Number of amino acids: Translated: 728; Mature: 728

Protein sequence:

>728_residues
MIKRQFLRSFLLGLVCVFVFSGLPSLAALKSTDSTSINSKYESSYPVIPIEEQPFYEELVSRADLWLHTPLGQVVGNSPR
DTLLNFYAVMADVGIVIDDVTAAHINDPGWFWDRQTLAEMEEAEELFSAAVASLDASLFPQAVRPYLADEAAIQLKHVLD
YVFHNSRQELTIPDASGMRVINDGRSKDTQSWTLPGSSIVMTSQLADDPVNTDYFFSAETVLSAAQMYDHIRLQAEELAA
EPFVAATFYQDFIHTPGHLFPPKWYLMMPKPLRGAFETEVLLGETLFQVALSIIAVALFALVSLKLIQNLVLSYRDHAPS
RDDLQGIWMLDGIAWKRVLIVLPILPLTKLTELFVDEYLNFTGVPLLVFTIVFEVLFFGICIVFSFLFFEALGRSLSEAF
VKFSGSHESWKLLRTSNRIMPLCRISAGIISIFLIYNMLLQLGLSPTLVLALSTVPGLAIGLGASKLLSNLFAGLSLQTD
RPLRVGEFCEIGGDLGFIRKIGLRSVELQTVTGIVTIPNSVAEETVVNNFSRNKTNAGSVQSQGLELRIDLDQDPAFGPD
QITDLLELVRHNLASSAEFSCTCVTVEVDSGDQAVLVCIGLIKAQGWSDYLAMKERIAVRLKQLIDQVERSHFVLPVAYE
TSAEKLQVIPSLLRSVVAANPGFSMRACRLMEISEFSYDFKCHLFADGIDYKCFNDSIDRINKAILAEMAAQQIVIPYPT
AIEIQRDD

Sequences:

>Translated_728_residues
MIKRQFLRSFLLGLVCVFVFSGLPSLAALKSTDSTSINSKYESSYPVIPIEEQPFYEELVSRADLWLHTPLGQVVGNSPR
DTLLNFYAVMADVGIVIDDVTAAHINDPGWFWDRQTLAEMEEAEELFSAAVASLDASLFPQAVRPYLADEAAIQLKHVLD
YVFHNSRQELTIPDASGMRVINDGRSKDTQSWTLPGSSIVMTSQLADDPVNTDYFFSAETVLSAAQMYDHIRLQAEELAA
EPFVAATFYQDFIHTPGHLFPPKWYLMMPKPLRGAFETEVLLGETLFQVALSIIAVALFALVSLKLIQNLVLSYRDHAPS
RDDLQGIWMLDGIAWKRVLIVLPILPLTKLTELFVDEYLNFTGVPLLVFTIVFEVLFFGICIVFSFLFFEALGRSLSEAF
VKFSGSHESWKLLRTSNRIMPLCRISAGIISIFLIYNMLLQLGLSPTLVLALSTVPGLAIGLGASKLLSNLFAGLSLQTD
RPLRVGEFCEIGGDLGFIRKIGLRSVELQTVTGIVTIPNSVAEETVVNNFSRNKTNAGSVQSQGLELRIDLDQDPAFGPD
QITDLLELVRHNLASSAEFSCTCVTVEVDSGDQAVLVCIGLIKAQGWSDYLAMKERIAVRLKQLIDQVERSHFVLPVAYE
TSAEKLQVIPSLLRSVVAANPGFSMRACRLMEISEFSYDFKCHLFADGIDYKCFNDSIDRINKAILAEMAAQQIVIPYPT
AIEIQRDD
>Mature_728_residues
MIKRQFLRSFLLGLVCVFVFSGLPSLAALKSTDSTSINSKYESSYPVIPIEEQPFYEELVSRADLWLHTPLGQVVGNSPR
DTLLNFYAVMADVGIVIDDVTAAHINDPGWFWDRQTLAEMEEAEELFSAAVASLDASLFPQAVRPYLADEAAIQLKHVLD
YVFHNSRQELTIPDASGMRVINDGRSKDTQSWTLPGSSIVMTSQLADDPVNTDYFFSAETVLSAAQMYDHIRLQAEELAA
EPFVAATFYQDFIHTPGHLFPPKWYLMMPKPLRGAFETEVLLGETLFQVALSIIAVALFALVSLKLIQNLVLSYRDHAPS
RDDLQGIWMLDGIAWKRVLIVLPILPLTKLTELFVDEYLNFTGVPLLVFTIVFEVLFFGICIVFSFLFFEALGRSLSEAF
VKFSGSHESWKLLRTSNRIMPLCRISAGIISIFLIYNMLLQLGLSPTLVLALSTVPGLAIGLGASKLLSNLFAGLSLQTD
RPLRVGEFCEIGGDLGFIRKIGLRSVELQTVTGIVTIPNSVAEETVVNNFSRNKTNAGSVQSQGLELRIDLDQDPAFGPD
QITDLLELVRHNLASSAEFSCTCVTVEVDSGDQAVLVCIGLIKAQGWSDYLAMKERIAVRLKQLIDQVERSHFVLPVAYE
TSAEKLQVIPSLLRSVVAANPGFSMRACRLMEISEFSYDFKCHLFADGIDYKCFNDSIDRINKAILAEMAAQQIVIPYPT
AIEIQRDD

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 80875; Mature: 80875

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKRQFLRSFLLGLVCVFVFSGLPSLAALKSTDSTSINSKYESSYPVIPIEEQPFYEELV
CCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCEEECCCCCHHHHHH
SRADLWLHTPLGQVVGNSPRDTLLNFYAVMADVGIVIDDVTAAHINDPGWFWDRQTLAEM
HHCCEEEECCHHHHHCCCCHHHHHHHHHHHHHCCCEEECCEEEEECCCCCCCCHHHHHHH
EEAEELFSAAVASLDASLFPQAVRPYLADEAAIQLKHVLDYVFHNSRQELTIPDASGMRV
HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEE
INDGRSKDTQSWTLPGSSIVMTSQLADDPVNTDYFFSAETVLSAAQMYDHIRLQAEELAA
ECCCCCCCCCEEECCCCCEEEEHHHCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHCC
EPFVAATFYQDFIHTPGHLFPPKWYLMMPKPLRGAFETEVLLGETLFQVALSIIAVALFA
CCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LVSLKLIQNLVLSYRDHAPSRDDLQGIWMLDGIAWKRVLIVLPILPLTKLTELFVDEYLN
HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
FTGVPLLVFTIVFEVLFFGICIVFSFLFFEALGRSLSEAFVKFSGSHESWKLLRTSNRIM
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCC
PLCRISAGIISIFLIYNMLLQLGLSPTLVLALSTVPGLAIGLGASKLLSNLFAGLSLQTD
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHCCHHHHHHHHHHCCEECCC
RPLRVGEFCEIGGDLGFIRKIGLRSVELQTVTGIVTIPNSVAEETVVNNFSRNKTNAGSV
CCCCCCHHHHCCCCHHHHHHHCCCEEEEEEEEEEEECCCHHHHHHHHHCCCCCCCCCCCH
QSQGLELRIDLDQDPAFGPDQITDLLELVRHNLASSAEFSCTCVTVEVDSGDQAVLVCIG
HCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCHHHHHH
LIKAQGWSDYLAMKERIAVRLKQLIDQVERSHFVLPVAYETSAEKLQVIPSLLRSVVAAN
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHCC
PGFSMRACRLMEISEFSYDFKCHLFADGIDYKCFNDSIDRINKAILAEMAAQQIVIPYPT
CCCCHHHHHHHHHHHCCCCEEEEEEECCCCCEECCHHHHHHHHHHHHHHHHCCEEECCCC
AIEIQRDD
EEEEECCC
>Mature Secondary Structure
MIKRQFLRSFLLGLVCVFVFSGLPSLAALKSTDSTSINSKYESSYPVIPIEEQPFYEELV
CCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCEEECCCCCHHHHHH
SRADLWLHTPLGQVVGNSPRDTLLNFYAVMADVGIVIDDVTAAHINDPGWFWDRQTLAEM
HHCCEEEECCHHHHHCCCCHHHHHHHHHHHHHCCCEEECCEEEEECCCCCCCCHHHHHHH
EEAEELFSAAVASLDASLFPQAVRPYLADEAAIQLKHVLDYVFHNSRQELTIPDASGMRV
HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEE
INDGRSKDTQSWTLPGSSIVMTSQLADDPVNTDYFFSAETVLSAAQMYDHIRLQAEELAA
ECCCCCCCCCEEECCCCCEEEEHHHCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHCC
EPFVAATFYQDFIHTPGHLFPPKWYLMMPKPLRGAFETEVLLGETLFQVALSIIAVALFA
CCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LVSLKLIQNLVLSYRDHAPSRDDLQGIWMLDGIAWKRVLIVLPILPLTKLTELFVDEYLN
HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
FTGVPLLVFTIVFEVLFFGICIVFSFLFFEALGRSLSEAFVKFSGSHESWKLLRTSNRIM
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCC
PLCRISAGIISIFLIYNMLLQLGLSPTLVLALSTVPGLAIGLGASKLLSNLFAGLSLQTD
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHCCHHHHHHHHHHCCEECCC
RPLRVGEFCEIGGDLGFIRKIGLRSVELQTVTGIVTIPNSVAEETVVNNFSRNKTNAGSV
CCCCCCHHHHCCCCHHHHHHHCCCEEEEEEEEEEEECCCHHHHHHHHHCCCCCCCCCCCH
QSQGLELRIDLDQDPAFGPDQITDLLELVRHNLASSAEFSCTCVTVEVDSGDQAVLVCIG
HCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCHHHHHH
LIKAQGWSDYLAMKERIAVRLKQLIDQVERSHFVLPVAYETSAEKLQVIPSLLRSVVAAN
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHCC
PGFSMRACRLMEISEFSYDFKCHLFADGIDYKCFNDSIDRINKAILAEMAAQQIVIPYPT
CCCCHHHHHHHHHHHCCCCEEEEEEECCCCCEECCHHHHHHHHHHHHHHHHCCEEECCCC
AIEIQRDD
EEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA