Click here to switch to the map view.

The map label for this gene is yfhC [C]

Identifier: 148242060

GI number: 148242060

Start: 882056

End: 882505

Strand: Direct

Name: yfhC [C]

Synonym: SynRCC307_0961

Alternate gene names: 148242060

Gene position: 882056-882505 (Clockwise)

Preceding gene: 148242059

Following gene: 148242065

Centisome position: 39.64

GC content: 63.78

Gene sequence:

>450_bases
ATGGACCGCGACCTGCGCCAGCAGTTGATGGATCAAGCCCGGGCTGAGGCGGAATTGGGCTGGGCCGAAGGTGGCATTCC
AATTGGAGCGGTGCTGGCCACCGAATCGGGGGAAGTGGTGGCCCGCGGACACAATCAGCGCGTGCAGAACGGTGACCCCA
CCTCCCATGGCGAAACCCAGTGCATTCGCAACGCCGGGCGCCGGCGTGATTGGCATCAGCTCACCTTGGTGACCACGCTC
TCTCCCTGCCCCATGTGCGCGGGGACCGCGGTGCTGTTGGGATTTCGCCGGGTGCTCATCGGTGAGCGCCGCAGTTTTGC
CGGTCAGGAATCCTGGCTGGTGGATGCGGGCATTGAAGTGGACTGCCTCGATGACAGCGGCTGCATGGCCTTAATGGAGC
GCATGCTGCAGCACAAGCCCGATCTTTGGGCCGAAGACATCGGCCATTGA

Upstream 100 bases:

>100_bases
ATCGTTTTGAGCATTTCGATCGCAATCGTGATGGCTACGTCTCGGTTCAGGAGTTGATGGCGATGCGTCAGTCGCTCTCG
CCGCGCCGTCCCCGCTAGCG

Downstream 100 bases:

>100_bases
GCCCTTAGCGGCTCTGCAGCAGATAGCTGGTGGCGGGTTGACGGCGTTGAACCACAGACCGCTGTTGGTTTTTGCGGCGC
GCGGGGCGAGCTGGAGCGGT

Product: putative cytosine deaminase

Products: NA

Alternate protein names: TRNA-Adenosine Deaminase; TRNA-Specific Adenosine Deaminase; Cytidine/Deoxycytidine Deaminase; Cytosine/Adenosine Deaminase; Cytidine/Deoxycytidylate Deaminase Family Protein; Deaminase; Cytidine Deaminase; YfhC Protein; Cytidine/Deoxycytidylate Deaminase; CMP/DCMP Deaminase; tRNA Specific Adenosine Deaminase; Deoxycytidylate Deaminase; Cytidine And Deoxycytidylate Deaminase; Alpha Amylase Catalytic Region; TRNA-Specific Adenosine-34 Deaminase; TRNA-Adenosine Deaminase Cytosine/Adenosine Deaminases; tRNA Deaminase; Cytidine Or Deoxycytidylate; Zinc-Dependent Cytosine Deaminase

Number of amino acids: Translated: 149; Mature: 149

Protein sequence:

>149_residues
MDRDLRQQLMDQARAEAELGWAEGGIPIGAVLATESGEVVARGHNQRVQNGDPTSHGETQCIRNAGRRRDWHQLTLVTTL
SPCPMCAGTAVLLGFRRVLIGERRSFAGQESWLVDAGIEVDCLDDSGCMALMERMLQHKPDLWAEDIGH

Sequences:

>Translated_149_residues
MDRDLRQQLMDQARAEAELGWAEGGIPIGAVLATESGEVVARGHNQRVQNGDPTSHGETQCIRNAGRRRDWHQLTLVTTL
SPCPMCAGTAVLLGFRRVLIGERRSFAGQESWLVDAGIEVDCLDDSGCMALMERMLQHKPDLWAEDIGH
>Mature_149_residues
MDRDLRQQLMDQARAEAELGWAEGGIPIGAVLATESGEVVARGHNQRVQNGDPTSHGETQCIRNAGRRRDWHQLTLVTTL
SPCPMCAGTAVLLGFRRVLIGERRSFAGQESWLVDAGIEVDCLDDSGCMALMERMLQHKPDLWAEDIGH

Specific function: Mutation In This Protein Makes E.Coli Resistant To The Toxic Proteins Encoded By The Gef Gene Family. [C]

COG id: COG0590

COG function: function code FJ; Cytosine/adenosine deaminases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693172, Length=109, Percent_Identity=34.8623853211009, Blast_Score=61, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6325319, Length=146, Percent_Identity=42.4657534246575, Blast_Score=118, Evalue=4e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16435; Mature: 16435

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: PS00136 SUBTILASE_ASP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRDLRQQLMDQARAEAELGWAEGGIPIGAVLATESGEVVARGHNQRVQNGDPTSHGETQ
CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEECCCCCCCCCCCCCCCCHHH
CIRNAGRRRDWHQLTLVTTLSPCPMCAGTAVLLGFRRVLIGERRSFAGQESWLVDAGIEV
HHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCEE
DCLDDSGCMALMERMLQHKPDLWAEDIGH
EEECCCCHHHHHHHHHHCCCCCCHHHCCC
>Mature Secondary Structure
MDRDLRQQLMDQARAEAELGWAEGGIPIGAVLATESGEVVARGHNQRVQNGDPTSHGETQ
CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEECCCCCCCCCCCCCCCCHHH
CIRNAGRRRDWHQLTLVTTLSPCPMCAGTAVLLGFRRVLIGERRSFAGQESWLVDAGIEV
HHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCEE
DCLDDSGCMALMERMLQHKPDLWAEDIGH
EEECCCCHHHHHHHHHHCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA