Click here to switch to the map view.

The map label for this gene is xisC [H]

Identifier: 148241954

GI number: 148241954

Start: 777294

End: 778442

Strand: Direct

Name: xisC [H]

Synonym: SynRCC307_0855

Alternate gene names: 148241954

Gene position: 777294-778442 (Clockwise)

Preceding gene: 148241950

Following gene: 148241955

Centisome position: 34.94

GC content: 64.49

Gene sequence:

>1149_bases
ATGTCAGCGCTGCCGGCCGAGAGCCTCGAACAGCTCAATAGCGGCTTGCGCAGTGCTGGAGTGCGCTTGCGGCTTGAGCA
ACGCGGCCAGCGGCTGGGGTTGCGGGGGCCACTGCCGCGGCGTGATGGCCAACCGGGGTTGCAGGTGCAGCGCCTCAGCT
TGGGGTTTCCGGCGACCTCCGATGGTTTGGCGGCGGCGTTGCAGAGGCTGCACCAGGTGCAGCAGCAGGTGCAGGACAGC
AGCTTCCAGTGGCCCCAGAGCGTGGAGCCGCCAAGTCCGGTTGAGGCGCCAACGGGTCTCGATGGAGCCCTGGATCGGTT
TGAAAAACAGTTCCATGCCGATCCACGTCGGCGTCGCCAGCCCGCTGGCAGCCGCAGCACCTGGACCTCCGCCTATCGCC
CCTATCTCAGGCGGTTAGCCGCCCAAGGCCAGAGCCGTTTGTCGGTGTCCCTGCTCGAGCAGGTGCTGGAGAGTTACCCC
CTGGCAAGCCGATCGCGGCAGCAGTGCGGTCTGGTGCTGTCGCTGCTCGCCAGGCAAGAGCAGTTGCAGCTTCCAGCCGA
TTGGAATGAACGGGCTGCGGGCTATGGCCTGCATCAGGCCCGTTTTCGGCAGTTGCCCAGTGATTGTCAGATCCTGGAGG
TCGTCGATGCCATTCCCAATCCTGGCTGGCGCCTGGTGTTTGGCCTGATGGCCACCTATGGATTGCGGAACCATGAGGTG
TTTTTCACCGATTTTTCTGGGCTGGATGCCAGCCAAGACGGTGTGGTGCGGGTCCTGCCGACCACCAAGACCGGTGAGCA
CCAGGTTTGGCCGTTTTTGCCGGAGTGGGTGGATCACTTCGCCCTGCGCCCGTTGGCCCGGCAGCGGGCCCTATTGCCGC
CAATTTGCACCGATCTCAGGACGACCACCCTGCAGCAGGTGGGACGCCGCGTGGCGGAGCAGTTTCGCCGCTATCAGCTG
CCGCTAACGCCCTATGACCTACGCCATGCTTGGGCCCTGCGCACCATCCACATGGGTTTGCCCGATACCGTGGCAGCTCG
AATGATGGGGCACTCGGTGGCCATTCACACCCGCACCTATCACCACTGGATTACCCGCCGTGATCAGCAGCAGGCCGTTG
ATGCCGCCTTGGCGCGGCGAAGCGCCTAA

Upstream 100 bases:

>100_bases
GGAGGACGATTCCGACTCGGGACAAGGGGCTGACCTCAGCGATGGCAGAGAGCCTAACCAGGCCCTGGTTTTCTTCTATT
TCGGTCGTTACGTTCCGGTC

Downstream 100 bases:

>100_bases
CGAGCAATGGCAACCTTCCTGAGGCCCCTGGCCTACCGGCATCGCTGGATTTACGACAGCGTCACGGCCATCAGCTCCCT
CAGTGTTGGTGGTGTTGCTC

Product: Phage integrase family protein

Products: NA

Alternate protein names: HupL element site-specific recombinase [H]

Number of amino acids: Translated: 382; Mature: 381

Protein sequence:

>382_residues
MSALPAESLEQLNSGLRSAGVRLRLEQRGQRLGLRGPLPRRDGQPGLQVQRLSLGFPATSDGLAAALQRLHQVQQQVQDS
SFQWPQSVEPPSPVEAPTGLDGALDRFEKQFHADPRRRRQPAGSRSTWTSAYRPYLRRLAAQGQSRLSVSLLEQVLESYP
LASRSRQQCGLVLSLLARQEQLQLPADWNERAAGYGLHQARFRQLPSDCQILEVVDAIPNPGWRLVFGLMATYGLRNHEV
FFTDFSGLDASQDGVVRVLPTTKTGEHQVWPFLPEWVDHFALRPLARQRALLPPICTDLRTTTLQQVGRRVAEQFRRYQL
PLTPYDLRHAWALRTIHMGLPDTVAARMMGHSVAIHTRTYHHWITRRDQQQAVDAALARRSA

Sequences:

>Translated_382_residues
MSALPAESLEQLNSGLRSAGVRLRLEQRGQRLGLRGPLPRRDGQPGLQVQRLSLGFPATSDGLAAALQRLHQVQQQVQDS
SFQWPQSVEPPSPVEAPTGLDGALDRFEKQFHADPRRRRQPAGSRSTWTSAYRPYLRRLAAQGQSRLSVSLLEQVLESYP
LASRSRQQCGLVLSLLARQEQLQLPADWNERAAGYGLHQARFRQLPSDCQILEVVDAIPNPGWRLVFGLMATYGLRNHEV
FFTDFSGLDASQDGVVRVLPTTKTGEHQVWPFLPEWVDHFALRPLARQRALLPPICTDLRTTTLQQVGRRVAEQFRRYQL
PLTPYDLRHAWALRTIHMGLPDTVAARMMGHSVAIHTRTYHHWITRRDQQQAVDAALARRSA
>Mature_381_residues
SALPAESLEQLNSGLRSAGVRLRLEQRGQRLGLRGPLPRRDGQPGLQVQRLSLGFPATSDGLAAALQRLHQVQQQVQDSS
FQWPQSVEPPSPVEAPTGLDGALDRFEKQFHADPRRRRQPAGSRSTWTSAYRPYLRRLAAQGQSRLSVSLLEQVLESYPL
ASRSRQQCGLVLSLLARQEQLQLPADWNERAAGYGLHQARFRQLPSDCQILEVVDAIPNPGWRLVFGLMATYGLRNHEVF
FTDFSGLDASQDGVVRVLPTTKTGEHQVWPFLPEWVDHFALRPLARQRALLPPICTDLRTTTLQQVGRRVAEQFRRYQLP
LTPYDLRHAWALRTIHMGLPDTVAARMMGHSVAIHTRTYHHWITRRDQQQAVDAALARRSA

Specific function: Essential for DNA excision. Site specific recombinase necessary for the excision of the 10.5 kb hupL element during heterocyst differentiation [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xisA/xisC recombinase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 43188; Mature: 43057

Theoretical pI: Translated: 11.05; Mature: 11.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSALPAESLEQLNSGLRSAGVRLRLEQRGQRLGLRGPLPRRDGQPGLQVQRLSLGFPATS
CCCCCHHHHHHHHHHHHHCCCEEEEHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC
DGLAAALQRLHQVQQQVQDSSFQWPQSVEPPSPVEAPTGLDGALDRFEKQFHADPRRRRQ
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHCC
PAGSRSTWTSAYRPYLRRLAAQGQSRLSVSLLEQVLESYPLASRSRQQCGLVLSLLARQE
CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
QLQLPADWNERAAGYGLHQARFRQLPSDCQILEVVDAIPNPGWRLVFGLMATYGLRNHEV
HCCCCCCCCCHHHCCCHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEE
FFTDFSGLDASQDGVVRVLPTTKTGEHQVWPFLPEWVDHFALRPLARQRALLPPICTDLR
EEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
TTTLQQVGRRVAEQFRRYQLPLTPYDLRHAWALRTIHMGLPDTVAARMMGHSVAIHTRTY
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEHHHH
HHWITRRDQQQAVDAALARRSA
HHHHHCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SALPAESLEQLNSGLRSAGVRLRLEQRGQRLGLRGPLPRRDGQPGLQVQRLSLGFPATS
CCCCHHHHHHHHHHHHHCCCEEEEHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCC
DGLAAALQRLHQVQQQVQDSSFQWPQSVEPPSPVEAPTGLDGALDRFEKQFHADPRRRRQ
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHCC
PAGSRSTWTSAYRPYLRRLAAQGQSRLSVSLLEQVLESYPLASRSRQQCGLVLSLLARQE
CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
QLQLPADWNERAAGYGLHQARFRQLPSDCQILEVVDAIPNPGWRLVFGLMATYGLRNHEV
HCCCCCCCCCHHHCCCHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEE
FFTDFSGLDASQDGVVRVLPTTKTGEHQVWPFLPEWVDHFALRPLARQRALLPPICTDLR
EEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
TTTLQQVGRRVAEQFRRYQLPLTPYDLRHAWALRTIHMGLPDTVAARMMGHSVAIHTRTY
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEHHHH
HHWITRRDQQQAVDAALARRSA
HHHHHCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7846053; 11759840 [H]