Definition Synechococcus sp. RCC307, complete genome.
Accession NC_009482
Length 2,224,914

Click here to switch to the map view.

The map label for this gene is 148241860

Identifier: 148241860

GI number: 148241860

Start: 690024

End: 690575

Strand: Direct

Name: 148241860

Synonym: SynRCC307_0761

Alternate gene names: NA

Gene position: 690024-690575 (Clockwise)

Preceding gene: 148241852

Following gene: 148241862

Centisome position: 31.01

GC content: 60.69

Gene sequence:

>552_bases
TTGTTTTCGATCCCAGAACAATCCAACGGCTTGGAGCCGATTGAGCAGCAGATCGAGCGGCTGCCAAACGCAACCCGTCG
CCTGGCGGCCCAACTGAGGTTGCCGTTGGAGATTGAGGAGGTTTGGGCGGTGTTGACCGATTACGACCGCCTCACCAGCT
TCATTCCCAATCTGATCTCCTCCCGGGTGGTGAGCCGTGAAGGTTTGGAGGTGGTGCTCGAGCAAGAGGGGGCCCAGCGT
TTTGCTGGATTGCGCTTCACGGCCAAAGTCACGTTGGAGCTGCGCGAGCGTCGCCCCGATGGCATGCTCGATTTCCGGAT
GGTCAGCGGCGACTTCCGCCGTTTTGAGGGCGCTTGGTTCGTCTGCCCTGACCCCCTCGGTGGCGTTCGCCTGCGCTACG
AGGTGTTGATTCAGGCCTGCAGGGGGATGCCCATCGGCCTGATCGAGCAGCGCCTCAAAGAAGACTTGTCGATGAACCTG
CGTGCTGTGGCCGCTGAAGCCCTTAAGCGCACCAACATGGCTGCCGCACAAGCAGAAGCCGCCATTTACTGA

Upstream 100 bases:

>100_bases
CTATAGGAAGCTTCTGCAAGCCTCCTTCACACCGTCAGGGCGAAAACACGTTTAGTGTCACTGATGTTGCAGATGTGACG
CTCTGGCGGCCCCAGTCCTT

Downstream 100 bases:

>100_bases
ATAACGTCTACTCATCGGTAGACGTTGATCTGGATGTGGTGTGATTGCCAGTGTCTGGATACCCCCAAGGGGATTCGAAC
CCCTGTCGCCTCCGTGAAAG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MFSIPEQSNGLEPIEQQIERLPNATRRLAAQLRLPLEIEEVWAVLTDYDRLTSFIPNLISSRVVSREGLEVVLEQEGAQR
FAGLRFTAKVTLELRERRPDGMLDFRMVSGDFRRFEGAWFVCPDPLGGVRLRYEVLIQACRGMPIGLIEQRLKEDLSMNL
RAVAAEALKRTNMAAAQAEAAIY

Sequences:

>Translated_183_residues
MFSIPEQSNGLEPIEQQIERLPNATRRLAAQLRLPLEIEEVWAVLTDYDRLTSFIPNLISSRVVSREGLEVVLEQEGAQR
FAGLRFTAKVTLELRERRPDGMLDFRMVSGDFRRFEGAWFVCPDPLGGVRLRYEVLIQACRGMPIGLIEQRLKEDLSMNL
RAVAAEALKRTNMAAAQAEAAIY
>Mature_183_residues
MFSIPEQSNGLEPIEQQIERLPNATRRLAAQLRLPLEIEEVWAVLTDYDRLTSFIPNLISSRVVSREGLEVVLEQEGAQR
FAGLRFTAKVTLELRERRPDGMLDFRMVSGDFRRFEGAWFVCPDPLGGVRLRYEVLIQACRGMPIGLIEQRLKEDLSMNL
RAVAAEALKRTNMAAAQAEAAIY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20777; Mature: 20777

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSIPEQSNGLEPIEQQIERLPNATRRLAAQLRLPLEIEEVWAVLTDYDRLTSFIPNLIS
CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
SRVVSREGLEVVLEQEGAQRFAGLRFTAKVTLELRERRPDGMLDFRMVSGDFRRFEGAWF
HHHHHHCCHHHHHHHHHHHHHHCCEEEHEEEHHHHHCCCCCCEEEEECCCHHHHHCCCEE
VCPDPLGGVRLRYEVLIQACRGMPIGLIEQRLKEDLSMNLRAVAAEALKRTNMAAAQAEA
ECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
AIY
CCC
>Mature Secondary Structure
MFSIPEQSNGLEPIEQQIERLPNATRRLAAQLRLPLEIEEVWAVLTDYDRLTSFIPNLIS
CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
SRVVSREGLEVVLEQEGAQRFAGLRFTAKVTLELRERRPDGMLDFRMVSGDFRRFEGAWF
HHHHHHCCHHHHHHHHHHHHHHCCEEEHEEEHHHHHCCCCCCEEEEECCCHHHHHCCCEE
VCPDPLGGVRLRYEVLIQACRGMPIGLIEQRLKEDLSMNLRAVAAEALKRTNMAAAQAEA
ECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
AIY
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA