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The map label for this gene is araQ [H]

Identifier: 148241846

GI number: 148241846

Start: 675765

End: 676601

Strand: Direct

Name: araQ [H]

Synonym: SynRCC307_0747

Alternate gene names: 148241846

Gene position: 675765-676601 (Clockwise)

Preceding gene: 148241845

Following gene: 148241848

Centisome position: 30.37

GC content: 59.86

Gene sequence:

>837_bases
ATGACCGCTCGCCGCGCGCCTCTGTGGTCGCTGCTGCTGCAGCTGACGGTGCTGTTGCTGGTGGCCTTGGTGGTTTTGAT
CCCCTTGCTCTGGCTGCTGAGCACATCGTTGAAGGGCCCAGCTGAAGACATCTTTCAAGCGCCGCCCAGCCTGTTTCCGG
CTCAGCCCAGCCTGCAGGCCTACGGAACCTTGTTCAGCCAGAGCCCAATGGGGCGCTATTTGCTGAACAGCACCGTTGTG
AGTGTGTTCAGCGTGGTGGCCAACCTGCTGTTCTGCTCACTGGCGGCCTTCCCCCTGGCGCGGATGCGCTTCCGCGGCCG
CGGCATCGTCTTGGCCCTGGTGGTGGCCACGATTTTGATTCCGTTTCAGGTGGTGATGATCCCGCTTTACCTGCTGATGG
TTCAGCTGGGTTTGCGCAATTCGTTGATGGCACTGATCCTGCCCAATGCCGCCACCGCCTTTGGCATCTACCTATTGCGC
CAGAGCTTTTTGGGGGTTCCCAAAGAGCTGGAGGAGGCGGCCCGCATGGATGGCTGCACTGCGTTGGGTGAGTGGTGGAA
CGTGTTGATTCCAGCGGCGCGAGCTGATCTGATCACCCTGGCGATGTTTGTGTTCATCGGCACCTGGAGTGACTTCCTCT
GGCCCCTGGTGATTCTTGATGACCCTGGTCTCTACACCTTGCCGTTGGGCCTGCAGCAGCTCTCCAGTTCGTTTTCGTTG
GATTGGCGTTTGGTGGCTGCCGGTTCAGTGGTGTCAATTGTTCCGGTGTTGGCGTTGTTTGTGTTCCTGCAGCGGTTCAT
CCTGCCCAGCGCCAGCGGCGATGCGGTGAAGGGTTAA

Upstream 100 bases:

>100_bases
CCGCTGCCCAGGCGTTTGTGAATGCCCTCAACCGCTTGGTGAGCGGCCAGAAACACAGCCCGCTGCATCCCCAACGCGCA
CCCCTGCCGGCCCCAGCGCT

Downstream 100 bases:

>100_bases
TCGCTTAAGCGCTAAATGCTTTGCGGGCCGGAATCGGGTATGGAATGCGGCGGTGCCGCATACGGCGCCACACCTTCACA
AATGCCCGCACGACCAATTC

Product: ABC-type sugar transport system, permease component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MTARRAPLWSLLLQLTVLLLVALVVLIPLLWLLSTSLKGPAEDIFQAPPSLFPAQPSLQAYGTLFSQSPMGRYLLNSTVV
SVFSVVANLLFCSLAAFPLARMRFRGRGIVLALVVATILIPFQVVMIPLYLLMVQLGLRNSLMALILPNAATAFGIYLLR
QSFLGVPKELEEAARMDGCTALGEWWNVLIPAARADLITLAMFVFIGTWSDFLWPLVILDDPGLYTLPLGLQQLSSSFSL
DWRLVAAGSVVSIVPVLALFVFLQRFILPSASGDAVKG

Sequences:

>Translated_278_residues
MTARRAPLWSLLLQLTVLLLVALVVLIPLLWLLSTSLKGPAEDIFQAPPSLFPAQPSLQAYGTLFSQSPMGRYLLNSTVV
SVFSVVANLLFCSLAAFPLARMRFRGRGIVLALVVATILIPFQVVMIPLYLLMVQLGLRNSLMALILPNAATAFGIYLLR
QSFLGVPKELEEAARMDGCTALGEWWNVLIPAARADLITLAMFVFIGTWSDFLWPLVILDDPGLYTLPLGLQQLSSSFSL
DWRLVAAGSVVSIVPVLALFVFLQRFILPSASGDAVKG
>Mature_277_residues
TARRAPLWSLLLQLTVLLLVALVVLIPLLWLLSTSLKGPAEDIFQAPPSLFPAQPSLQAYGTLFSQSPMGRYLLNSTVVS
VFSVVANLLFCSLAAFPLARMRFRGRGIVLALVVATILIPFQVVMIPLYLLMVQLGLRNSLMALILPNAATAFGIYLLRQ
SFLGVPKELEEAARMDGCTALGEWWNVLIPAARADLITLAMFVFIGTWSDFLWPLVILDDPGLYTLPLGLQQLSSSFSLD
WRLVAAGSVVSIVPVLALFVFLQRFILPSASGDAVKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=265, Percent_Identity=32.0754716981132, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1789860, Length=266, Percent_Identity=27.0676691729323, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1790464, Length=213, Percent_Identity=26.7605633802817, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30316; Mature: 30185

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTARRAPLWSLLLQLTVLLLVALVVLIPLLWLLSTSLKGPAEDIFQAPPSLFPAQPSLQA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCHHH
YGTLFSQSPMGRYLLNSTVVSVFSVVANLLFCSLAAFPLARMRFRGRGIVLALVVATILI
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
PFQVVMIPLYLLMVQLGLRNSLMALILPNAATAFGIYLLRQSFLGVPKELEEAARMDGCT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHH
ALGEWWNVLIPAARADLITLAMFVFIGTWSDFLWPLVILDDPGLYTLPLGLQQLSSSFSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCEEECCCHHHHHHHCCC
DWRLVAAGSVVSIVPVLALFVFLQRFILPSASGDAVKG
CEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
TARRAPLWSLLLQLTVLLLVALVVLIPLLWLLSTSLKGPAEDIFQAPPSLFPAQPSLQA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCCCHHH
YGTLFSQSPMGRYLLNSTVVSVFSVVANLLFCSLAAFPLARMRFRGRGIVLALVVATILI
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
PFQVVMIPLYLLMVQLGLRNSLMALILPNAATAFGIYLLRQSFLGVPKELEEAARMDGCT
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHH
ALGEWWNVLIPAARADLITLAMFVFIGTWSDFLWPLVILDDPGLYTLPLGLQQLSSSFSL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCEEECCCHHHHHHHCCC
DWRLVAAGSVVSIVPVLALFVFLQRFILPSASGDAVKG
CEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]