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The map label for this gene is spoU [C]

Identifier: 148241713

GI number: 148241713

Start: 547848

End: 548687

Strand: Direct

Name: spoU [C]

Synonym: SynRCC307_0614

Alternate gene names: 148241713

Gene position: 547848-548687 (Clockwise)

Preceding gene: 148241712

Following gene: 148241714

Centisome position: 24.62

GC content: 64.76

Gene sequence:

>840_bases
TTGAGCAGATTTGACGGTCGCCCCGCTGATCTGATCAGCAGTCGCCGCAATCCCCTGGTGCAGCAGGTGCGCGCTTTGCA
GCAGCCGCGCGGCCGCCGCGAGCAGGGCTTGCTGCTGCTGGAGGGCACCCATTTGCTGCAGGAATGCCGCCGTCTTGGGC
TGCCCTTAGATCGTTTGATCGCCACAACCCGCTGGCAAGAGCAACACCCAACGCTGCTGGGGTCTGAGCCATTGCAACCG
GTCAGCCCTGAGGTGTTGCAGGCCATGGCCAGCACCGATAGCCCGGATGGGGTGATCGCCCTGTTGCCCCATCCAGCTCC
TGGGCTGCAAGCTCCGTCTTGGCCGCAGGCCAAATCGCCGCTGCTGTTGGCCTTGGACCGCGTTCAAGATCCCGGCAATC
TCGGCACGATCCTGCGCACCGCCCTGGCTGCTGGTGTGGATCGGGTTTGGTTGGGCGGTGGCGCCGACCCCTGGCAGCCC
AAGGTGCTGCGAGCTTCTGCTGGTGCTGCCTTGGAGCTCTCCATGCAGCGGCTTGATGATTTGGCTCCTGTGCTGGCCAT
GGCCAGAGAGCGGGGTGTGGCTTGTTATGCCGCACTGCGCGATGGCGGCCAGCCCTATTGGCAGCCCGATTGGCATCAGC
CCAGCCTGCTGCTGCTGGGAAATGAAGGCAGCGGCTTGGATCCAGCCCTGGTGCAGCAGGGCGTCACAGCCCTAACGATT
CCACATCACGCGGCGGTGGAATCCCTCAATGTGGCCGTGGCAGCGGGCGTGCTGTTACTGGAGCGCGTAAGGCAGGGGCA
CGACAGGAGAGAATCGGCGGCAACTGCGTTGGGCGCTTGA

Upstream 100 bases:

>100_bases
CTGCGCACCGAAGGCATCGAGGGTTCGGTGGCTTCGGTGAAGGGCTTGGATCTCAGCCCCGAAGGCATCGTGATGAAGAA
CGACATTCACCTGCGCCGCT

Downstream 100 bases:

>100_bases
CCGCGGCGATGGACTACGACCTGATCGTGATCGGGGCCGGCTATGGCGGCTTTGATGCAGCGAAGCACGCTGCTGAGAAG
GGCCTGAAGACGGCCATCAT

Product: rRNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 278

Protein sequence:

>279_residues
MSRFDGRPADLISSRRNPLVQQVRALQQPRGRREQGLLLLEGTHLLQECRRLGLPLDRLIATTRWQEQHPTLLGSEPLQP
VSPEVLQAMASTDSPDGVIALLPHPAPGLQAPSWPQAKSPLLLALDRVQDPGNLGTILRTALAAGVDRVWLGGGADPWQP
KVLRASAGAALELSMQRLDDLAPVLAMARERGVACYAALRDGGQPYWQPDWHQPSLLLLGNEGSGLDPALVQQGVTALTI
PHHAAVESLNVAVAAGVLLLERVRQGHDRRESAATALGA

Sequences:

>Translated_279_residues
MSRFDGRPADLISSRRNPLVQQVRALQQPRGRREQGLLLLEGTHLLQECRRLGLPLDRLIATTRWQEQHPTLLGSEPLQP
VSPEVLQAMASTDSPDGVIALLPHPAPGLQAPSWPQAKSPLLLALDRVQDPGNLGTILRTALAAGVDRVWLGGGADPWQP
KVLRASAGAALELSMQRLDDLAPVLAMARERGVACYAALRDGGQPYWQPDWHQPSLLLLGNEGSGLDPALVQQGVTALTI
PHHAAVESLNVAVAAGVLLLERVRQGHDRRESAATALGA
>Mature_278_residues
SRFDGRPADLISSRRNPLVQQVRALQQPRGRREQGLLLLEGTHLLQECRRLGLPLDRLIATTRWQEQHPTLLGSEPLQPV
SPEVLQAMASTDSPDGVIALLPHPAPGLQAPSWPQAKSPLLLALDRVQDPGNLGTILRTALAAGVDRVWLGGGADPWQPK
VLRASAGAALELSMQRLDDLAPVLAMARERGVACYAALRDGGQPYWQPDWHQPSLLLLGNEGSGLDPALVQQGVTALTIP
HHAAVESLNVAVAAGVLLLERVRQGHDRRESAATALGA

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI8922534, Length=301, Percent_Identity=28.9036544850498, Blast_Score=80, Evalue=2e-15,
Organism=Escherichia coli, GI1790623, Length=147, Percent_Identity=32.6530612244898, Blast_Score=70, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24666840, Length=287, Percent_Identity=25.7839721254355, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 29959; Mature: 29828

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRFDGRPADLISSRRNPLVQQVRALQQPRGRREQGLLLLEGTHLLQECRRLGLPLDRLI
CCCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCHHCEEEEECHHHHHHHHHHCCCHHHHH
ATTRWQEQHPTLLGSEPLQPVSPEVLQAMASTDSPDGVIALLPHPAPGLQAPSWPQAKSP
HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCC
LLLALDRVQDPGNLGTILRTALAAGVDRVWLGGGADPWQPKVLRASAGAALELSMQRLDD
HHEEHHHCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEECCCCCHHHHHHHHHHH
LAPVLAMARERGVACYAALRDGGQPYWQPDWHQPSLLLLGNEGSGLDPALVQQGVTALTI
HHHHHHHHHHCCCEEEEEHHCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHCCCEEEEC
PHHAAVESLNVAVAAGVLLLERVRQGHDRRESAATALGA
CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCC
>Mature Secondary Structure 
SRFDGRPADLISSRRNPLVQQVRALQQPRGRREQGLLLLEGTHLLQECRRLGLPLDRLI
CCCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCHHCEEEEECHHHHHHHHHHCCCHHHHH
ATTRWQEQHPTLLGSEPLQPVSPEVLQAMASTDSPDGVIALLPHPAPGLQAPSWPQAKSP
HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCC
LLLALDRVQDPGNLGTILRTALAAGVDRVWLGGGADPWQPKVLRASAGAALELSMQRLDD
HHEEHHHCCCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEECCCCCHHHHHHHHHHH
LAPVLAMARERGVACYAALRDGGQPYWQPDWHQPSLLLLGNEGSGLDPALVQQGVTALTI
HHHHHHHHHHCCCEEEEEHHCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHCCCEEEEC
PHHAAVESLNVAVAAGVLLLERVRQGHDRRESAATALGA
CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]