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The map label for this gene is rsmB [H]

Identifier: 148241673

GI number: 148241673

Start: 508390

End: 509754

Strand: Direct

Name: rsmB [H]

Synonym: SynRCC307_0574

Alternate gene names: 148241673

Gene position: 508390-509754 (Clockwise)

Preceding gene: 148241672

Following gene: 148241678

Centisome position: 22.85

GC content: 67.25

Gene sequence:

>1365_bases
GTGAGCAAGGGGCGTTGCCCTTGCGGCGCTATCTGTGGACACCGGAGCTGCCCATTCGTATTGAGCCCTGATTCCGCTGT
TGGTTTGCCGCCGCGCCTGGTGGCCTGGCGAGTGTTGGAGGCGGTGGGGGATGGGGCCTATGCCGATCTGGCCCTCGAGC
GCGAGCTCAAGCGCAGCAAACTCAGCCCCCGCGATCGCGGTTTGGCCACCGAGCTGGCCTATGGCGCCATCCGCCAGCGC
CGGCGCCTGGATGGTTGGCTTGATCTCCTTGGCAAGGTGCCAGCCGCCAAGCAGCCGCCGCGGCTGCGCTGGCTTCTGCA
TGTGGGCCTGCAGCAGATTTTGCTGATGGACCGGGTGCCTGCATCGGCGGCCGTGAGCACGGCGGTGGAGCTGGCCAAAC
GCGAACGGCTGCAGCGCTTGGCACCGGTGGTGAATGGGGTGCTGCGCGCGGCGGTGCGGGCCGTTGAGGCCGGCGAAAGC
CTGCCTGTGCCCAGTGATCCCCAAAAACGCTTGGCCCTGGAGCACTCCCTGCCCGATTGGCTTGTCGCCGAGCTGTGGGG
GCAGATCGGCCCTGAGCGCACCGAGGCGTTGGCAGCGGCGAGCAACCGCATCCCGCCGCTTGATCTGCGCTGCAACCGCC
TGCGCAGCAGCCGTGAGGCCCTGCTTGAAAACCTTCCAGCTGTGGCCTTAGCGGAGCTGCCCGATGGGCTCACCCTCACC
AGCCGCCCGGGACCGTTGCCGCAGCTGGCTGGTTTCAGCGAAGGCCAGTGGTGCGTGCAAGATCGCGCCGCCCAGCGCAT
TGCACCGCTGCTGGATCCAAAGCCCGGTCAGCGGGTGCTGGATGCCTGCGCGGCCCCCGGCGGCAAGACCACCCACATCG
CTGAGTTGATGGGCGATCAAGGCGAGGTGGTGGCGGTTGATGTGGCGCCAAGGCGGCTGCAGCAGGTGAGCGCCAATGCC
GAGCGCTTGGGCTTGAGCTGCATCCGCACCGAAGCGGCTGACGCCACCGACCTCACCGATTGGGAGGCCGAAAGCTTTGA
TCGGGTGCTGCTCGATGTGCCCTGCTCAGGGCTGGGCACCTTGGCGCGCCATGCCGATGCCCGCTGGAACCTCAAACCCG
ATGGCATCGAGGAGTTGGTGGGCCTGCAGCACCAGTTGCTGGAGCAGGGCGCGCGGCTACTCAAACCCGATGGCCGCTTG
GTCTACGCCACCTGCACGGTGCACCCCGCAGAGAACACAGGCGTGGTGGAGGCCTTTGTGGAGGAAAACCCCGATTGGCA
ATTCAGTGAGCCGCCAATGCAGCTGTGGCCCGATCCGCAAGGCGGCGATGGCTTCTTTGCTGCGGTGCTCAGCCTCCGGC
GGTGA

Upstream 100 bases:

>100_bases
CGGGTGGTGAACGCCAGCGGGCGCATCAGCTTTTCGCTGGCCCGGGAAGGCAGCGATTGGATTCAGCGGCAGCTGTTGAT
CGAGGAAGGCATCCCCGTCA

Downstream 100 bases:

>100_bases
ACTGAATCAGGTCGCGGCAGCCGGTGATGCCGACCACGGCAAACAGCACCGCCCCCAGCACCATGGCGCTGACATGCAGC
CGCCGCAGTTGGGTGGTGGA

Product: ribosomal RNA small subunit methyltransferase B

Products: NA

Alternate protein names: rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 454; Mature: 453

Protein sequence:

>454_residues
MSKGRCPCGAICGHRSCPFVLSPDSAVGLPPRLVAWRVLEAVGDGAYADLALERELKRSKLSPRDRGLATELAYGAIRQR
RRLDGWLDLLGKVPAAKQPPRLRWLLHVGLQQILLMDRVPASAAVSTAVELAKRERLQRLAPVVNGVLRAAVRAVEAGES
LPVPSDPQKRLALEHSLPDWLVAELWGQIGPERTEALAAASNRIPPLDLRCNRLRSSREALLENLPAVALAELPDGLTLT
SRPGPLPQLAGFSEGQWCVQDRAAQRIAPLLDPKPGQRVLDACAAPGGKTTHIAELMGDQGEVVAVDVAPRRLQQVSANA
ERLGLSCIRTEAADATDLTDWEAESFDRVLLDVPCSGLGTLARHADARWNLKPDGIEELVGLQHQLLEQGARLLKPDGRL
VYATCTVHPAENTGVVEAFVEENPDWQFSEPPMQLWPDPQGGDGFFAAVLSLRR

Sequences:

>Translated_454_residues
MSKGRCPCGAICGHRSCPFVLSPDSAVGLPPRLVAWRVLEAVGDGAYADLALERELKRSKLSPRDRGLATELAYGAIRQR
RRLDGWLDLLGKVPAAKQPPRLRWLLHVGLQQILLMDRVPASAAVSTAVELAKRERLQRLAPVVNGVLRAAVRAVEAGES
LPVPSDPQKRLALEHSLPDWLVAELWGQIGPERTEALAAASNRIPPLDLRCNRLRSSREALLENLPAVALAELPDGLTLT
SRPGPLPQLAGFSEGQWCVQDRAAQRIAPLLDPKPGQRVLDACAAPGGKTTHIAELMGDQGEVVAVDVAPRRLQQVSANA
ERLGLSCIRTEAADATDLTDWEAESFDRVLLDVPCSGLGTLARHADARWNLKPDGIEELVGLQHQLLEQGARLLKPDGRL
VYATCTVHPAENTGVVEAFVEENPDWQFSEPPMQLWPDPQGGDGFFAAVLSLRR
>Mature_453_residues
SKGRCPCGAICGHRSCPFVLSPDSAVGLPPRLVAWRVLEAVGDGAYADLALERELKRSKLSPRDRGLATELAYGAIRQRR
RLDGWLDLLGKVPAAKQPPRLRWLLHVGLQQILLMDRVPASAAVSTAVELAKRERLQRLAPVVNGVLRAAVRAVEAGESL
PVPSDPQKRLALEHSLPDWLVAELWGQIGPERTEALAAASNRIPPLDLRCNRLRSSREALLENLPAVALAELPDGLTLTS
RPGPLPQLAGFSEGQWCVQDRAAQRIAPLLDPKPGQRVLDACAAPGGKTTHIAELMGDQGEVVAVDVAPRRLQQVSANAE
RLGLSCIRTEAADATDLTDWEAESFDRVLLDVPCSGLGTLARHADARWNLKPDGIEELVGLQHQLLEQGARLLKPDGRLV
YATCTVHPAENTGVVEAFVEENPDWQFSEPPMQLWPDPQGGDGFFAAVLSLRR

Specific function: Unknown

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI32698918, Length=208, Percent_Identity=41.8269230769231, Blast_Score=139, Evalue=8e-33,
Organism=Homo sapiens, GI76150625, Length=262, Percent_Identity=31.2977099236641, Blast_Score=106, Evalue=4e-23,
Organism=Homo sapiens, GI76150623, Length=262, Percent_Identity=31.2977099236641, Blast_Score=106, Evalue=4e-23,
Organism=Homo sapiens, GI23199998, Length=190, Percent_Identity=35.2631578947368, Blast_Score=104, Evalue=2e-22,
Organism=Homo sapiens, GI270288818, Length=190, Percent_Identity=35.2631578947368, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI270288816, Length=190, Percent_Identity=35.2631578947368, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI8922322, Length=190, Percent_Identity=35.2631578947368, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI39995082, Length=177, Percent_Identity=34.4632768361582, Blast_Score=96, Evalue=5e-20,
Organism=Homo sapiens, GI301336155, Length=177, Percent_Identity=34.4632768361582, Blast_Score=96, Evalue=5e-20,
Organism=Homo sapiens, GI40316918, Length=194, Percent_Identity=31.4432989690722, Blast_Score=69, Evalue=7e-12,
Organism=Homo sapiens, GI11545785, Length=158, Percent_Identity=29.746835443038, Blast_Score=69, Evalue=8e-12,
Organism=Escherichia coli, GI2367212, Length=405, Percent_Identity=36.5432098765432, Blast_Score=213, Evalue=1e-56,
Organism=Escherichia coli, GI87081985, Length=183, Percent_Identity=34.4262295081967, Blast_Score=107, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17536757, Length=319, Percent_Identity=27.5862068965517, Blast_Score=110, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI71998419, Length=237, Percent_Identity=32.0675105485232, Blast_Score=101, Evalue=8e-22,
Organism=Caenorhabditis elegans, GI115534021, Length=237, Percent_Identity=32.0675105485232, Blast_Score=100, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI25143471, Length=158, Percent_Identity=34.8101265822785, Blast_Score=78, Evalue=8e-15,
Organism=Saccharomyces cerevisiae, GI6324268, Length=304, Percent_Identity=26.9736842105263, Blast_Score=103, Evalue=5e-23,
Organism=Saccharomyces cerevisiae, GI6319447, Length=172, Percent_Identity=36.046511627907, Blast_Score=89, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24668781, Length=186, Percent_Identity=36.0215053763441, Blast_Score=110, Evalue=3e-24,
Organism=Drosophila melanogaster, GI21356513, Length=186, Percent_Identity=36.0215053763441, Blast_Score=109, Evalue=3e-24,
Organism=Drosophila melanogaster, GI22024126, Length=259, Percent_Identity=29.7297297297297, Blast_Score=99, Evalue=7e-21,
Organism=Drosophila melanogaster, GI21355201, Length=205, Percent_Identity=32.1951219512195, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI21356579, Length=221, Percent_Identity=26.2443438914027, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI19920494, Length=158, Percent_Identity=34.8101265822785, Blast_Score=81, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 49301; Mature: 49170

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: PS01153 NOL1_NOP2_SUN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKGRCPCGAICGHRSCPFVLSPDSAVGLPPRLVAWRVLEAVGDGAYADLALERELKRSK
CCCCCCCHHHHCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
LSPRDRGLATELAYGAIRQRRRLDGWLDLLGKVPAAKQPPRLRWLLHVGLQQILLMDRVP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
ASAAVSTAVELAKRERLQRLAPVVNGVLRAAVRAVEAGESLPVPSDPQKRLALEHSLPDW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHH
LVAELWGQIGPERTEALAAASNRIPPLDLRCNRLRSSREALLENLPAVALAELPDGLTLT
HHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCCEEC
SRPGPLPQLAGFSEGQWCVQDRAAQRIAPLLDPKPGQRVLDACAAPGGKTTHIAELMGDQ
CCCCCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHCCC
GEVVAVDVAPRRLQQVSANAERLGLSCIRTEAADATDLTDWEAESFDRVLLDVPCSGLGT
CCEEEEECCHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCHHHHCEEEEECCCCHHHH
LARHADARWNLKPDGIEELVGLQHQLLEQGARLLKPDGRLVYATCTVHPAENTGVVEAFV
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCEEHHH
EENPDWQFSEPPMQLWPDPQGGDGFFAAVLSLRR
HCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure 
SKGRCPCGAICGHRSCPFVLSPDSAVGLPPRLVAWRVLEAVGDGAYADLALERELKRSK
CCCCCCHHHHCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
LSPRDRGLATELAYGAIRQRRRLDGWLDLLGKVPAAKQPPRLRWLLHVGLQQILLMDRVP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
ASAAVSTAVELAKRERLQRLAPVVNGVLRAAVRAVEAGESLPVPSDPQKRLALEHSLPDW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCHHH
LVAELWGQIGPERTEALAAASNRIPPLDLRCNRLRSSREALLENLPAVALAELPDGLTLT
HHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCCCEEC
SRPGPLPQLAGFSEGQWCVQDRAAQRIAPLLDPKPGQRVLDACAAPGGKTTHIAELMGDQ
CCCCCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHCCC
GEVVAVDVAPRRLQQVSANAERLGLSCIRTEAADATDLTDWEAESFDRVLLDVPCSGLGT
CCEEEEECCHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCHHHHCEEEEECCCCHHHH
LARHADARWNLKPDGIEELVGLQHQLLEQGARLLKPDGRLVYATCTVHPAENTGVVEAFV
HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCEEHHH
EENPDWQFSEPPMQLWPDPQGGDGFFAAVLSLRR
HCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]