| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
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The map label for this gene is 148241401
Identifier: 148241401
GI number: 148241401
Start: 297969
End: 298922
Strand: Direct
Name: 148241401
Synonym: SynRCC307_0302
Alternate gene names: NA
Gene position: 297969-298922 (Clockwise)
Preceding gene: 148241400
Following gene: 148241405
Centisome position: 13.39
GC content: 61.64
Gene sequence:
>954_bases GTGACAGCCTCACGCCAGCGCCCCGAGCCGCCCTTCCGCCGTTGGGTGCGGCCTGTGATGGGTGGTCTGGCCACCATCGG TGCCATTGATACGGCCTCGATCACCCTCGAGCGCTGGGGTGTGATTGGCGAGTTGGCCTGCCCTGGTGGGGCCGATGGTT GCGACAAGGTGCTCAACAGTGCCTGGGGAACAGTGCTGGGCCAGCCCCTGGCGCTGTTTGGCTTCTTGGCCTATCTGGCC TTGGTGCTGCTCTCGTTGTTGCCGCTCATTCCGGCGGTGCAGCAGTGGTTGATCGATCGCCAGAGCAGCAGCGGTGGTTT AACTGCTCGCCGCTTTGGCCGCGGCCCCGATTTGTTTTGGCACCTGGGCTATCTGCTGAGCTTGGGCATGAGCGTGTTCA GCGCCGCCTTGGTGGGCTTGATGCTGTTCAAGATTCAAGCGATCTGCGCGTTCTGTCTGCTCTCAGCAGGCTTGAGCCTG GCCTTGTGGCTGCTGCATTTGCTCGGCCGTGAATGGGAAGACAGCGGTCAGGTGCTGTTCCGCAGTGTGATCTTGGTGGT GCTGGTGGGCTTGCTGAGCCTGGCCTGGGTGGCCTCGGCTGATCGCCCAGCTGTGTTGAGTGAAAAAGGCGCCCCGCCGG TTGTGACCAGCGTGAGCAATCCAGCCAAGTTGGCCTTGGCTGAGCATCTCAGCAGCATCGGCGCTCGCATGTATTCGGCC TATTGGTGCCCCCATTGCCATGAGCAGAAGGAGCTCTTTGGCCAGGAAGCAGCCGCCAAGCTCGATGTGATCGAGTGCGC CACCGATGGCAAAAACTCCCAGGCGTCGCTCTGCCAAAGCAAGGCGATCGAAGGCTTCCCCAGCTGGGAGATCAAGGGTC AAATCGATTCCGGTGTGAAGTCGCTGCAGAAGCTGGCTGACCTCAGCGGTTATCAAGGCCCGCGGAACTTCTGA
Upstream 100 bases:
>100_bases GATAGCCTGTTGGCCAATCCGGTGGATCCCTTGCGGGTGCAAGCCCTACGCCAAACCTTGCAGCGATGCCAAACTTCCTG AGTAAGGAAATCAAGAGCGA
Downstream 100 bases:
>100_bases TCGGTTGATCGCGCTGCTGCAGTGAGTGGTGCTGCCAGTAGGGAAGGGTTGCGGGGGCATCACAGCGGAAATGGCCGCCG CGGCTTTCTTGGCGGAAGTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 317; Mature: 316
Protein sequence:
>317_residues MTASRQRPEPPFRRWVRPVMGGLATIGAIDTASITLERWGVIGELACPGGADGCDKVLNSAWGTVLGQPLALFGFLAYLA LVLLSLLPLIPAVQQWLIDRQSSSGGLTARRFGRGPDLFWHLGYLLSLGMSVFSAALVGLMLFKIQAICAFCLLSAGLSL ALWLLHLLGREWEDSGQVLFRSVILVVLVGLLSLAWVASADRPAVLSEKGAPPVVTSVSNPAKLALAEHLSSIGARMYSA YWCPHCHEQKELFGQEAAAKLDVIECATDGKNSQASLCQSKAIEGFPSWEIKGQIDSGVKSLQKLADLSGYQGPRNF
Sequences:
>Translated_317_residues MTASRQRPEPPFRRWVRPVMGGLATIGAIDTASITLERWGVIGELACPGGADGCDKVLNSAWGTVLGQPLALFGFLAYLA LVLLSLLPLIPAVQQWLIDRQSSSGGLTARRFGRGPDLFWHLGYLLSLGMSVFSAALVGLMLFKIQAICAFCLLSAGLSL ALWLLHLLGREWEDSGQVLFRSVILVVLVGLLSLAWVASADRPAVLSEKGAPPVVTSVSNPAKLALAEHLSSIGARMYSA YWCPHCHEQKELFGQEAAAKLDVIECATDGKNSQASLCQSKAIEGFPSWEIKGQIDSGVKSLQKLADLSGYQGPRNF >Mature_316_residues TASRQRPEPPFRRWVRPVMGGLATIGAIDTASITLERWGVIGELACPGGADGCDKVLNSAWGTVLGQPLALFGFLAYLAL VLLSLLPLIPAVQQWLIDRQSSSGGLTARRFGRGPDLFWHLGYLLSLGMSVFSAALVGLMLFKIQAICAFCLLSAGLSLA LWLLHLLGREWEDSGQVLFRSVILVVLVGLLSLAWVASADRPAVLSEKGAPPVVTSVSNPAKLALAEHLSSIGARMYSAY WCPHCHEQKELFGQEAAAKLDVIECATDGKNSQASLCQSKAIEGFPSWEIKGQIDSGVKSLQKLADLSGYQGPRNF
Specific function: Unknown
COG id: COG4243
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34045; Mature: 33914
Theoretical pI: Translated: 7.99; Mature: 7.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTASRQRPEPPFRRWVRPVMGGLATIGAIDTASITLERWGVIGELACPGGADGCDKVLNS CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHCCCCCCCCHHHHHHHHH AWGTVLGQPLALFGFLAYLALVLLSLLPLIPAVQQWLIDRQSSSGGLTARRFGRGPDLFW HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCHHHH HLGYLLSLGMSVFSAALVGLMLFKIQAICAFCLLSAGLSLALWLLHLLGREWEDSGQVLF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH RSVILVVLVGLLSLAWVASADRPAVLSEKGAPPVVTSVSNPAKLALAEHLSSIGARMYSA HHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHH YWCPHCHEQKELFGQEAAAKLDVIECATDGKNSQASLCQSKAIEGFPSWEIKGQIDSGVK HCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEECCCHHHHHH SLQKLADLSGYQGPRNF HHHHHHHHCCCCCCCCC >Mature Secondary Structure TASRQRPEPPFRRWVRPVMGGLATIGAIDTASITLERWGVIGELACPGGADGCDKVLNS CCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHCCCCCCCCHHHHHHHHH AWGTVLGQPLALFGFLAYLALVLLSLLPLIPAVQQWLIDRQSSSGGLTARRFGRGPDLFW HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCHHHH HLGYLLSLGMSVFSAALVGLMLFKIQAICAFCLLSAGLSLALWLLHLLGREWEDSGQVLF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH RSVILVVLVGLLSLAWVASADRPAVLSEKGAPPVVTSVSNPAKLALAEHLSSIGARMYSA HHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHH YWCPHCHEQKELFGQEAAAKLDVIECATDGKNSQASLCQSKAIEGFPSWEIKGQIDSGVK HCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEECCCHHHHHH SLQKLADLSGYQGPRNF HHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA