Click here to switch to the map view.

The map label for this gene is yrbI [C]

Identifier: 148241385

GI number: 148241385

Start: 285583

End: 286116

Strand: Direct

Name: yrbI [C]

Synonym: SynRCC307_0286

Alternate gene names: 148241385

Gene position: 285583-286116 (Clockwise)

Preceding gene: 148241384

Following gene: 148241389

Centisome position: 12.84

GC content: 64.42

Gene sequence:

>534_bases
GTGAGCCGCCTCAGTCAGTCGCTACGTGGGCTTGAGTTGCTGGTGCTGGATGTGGATGGTGTCCTCACCGATGGTGGCTT
GAGTTATGCCCCCGATGGCCAGGTGTGGCGCCGCTTTGATGTGCGCGATGGCTTGGGATTGAAGCTTTTGCAGCAGGCGG
GGATCACCTTGGCGGTGATCAGTGGGGGCCGCAGCGGAGCCATTGAGCGCCGCGCCCAGGATTTAGGCATTGAGCACTGC
TTCACCGAGGTGCGCGATAAGCAGGCGCAATTGGGCCAGCTCCAACAGCAGCTTCAGGTGTTGCCCGCCGCCACGGGCTT
TGTTGGCGATGACCTCAACGACTTGGTGGTGCGCTCCCAGGTGGGCGTGATGGCAGCGCCTGCTGATGCCTGCAAAGCGT
TGCGCCGGCAGGCCGATTTGGTGTTGCGGCGCAGGGGCGGCCATGGGGCTGTTCGGGAGCTCGCCGAGCGGATTCTCAAG
GCACGCGGTGAGTGGACCGCGCTCGCTGCCGGTGGCTGGCGTCAGCGCAATTGA

Upstream 100 bases:

>100_bases
GGCCCAACATGGTGCCGTTGCATCGCCTCGAACCTCTGCTGGAGCAGCTATTGGCGATTCGCGCAGCCGCCGCAGCGCAG
CCGGAGGCCGTCAGCAGCCT

Downstream 100 bases:

>100_bases
GCTGCGATTGCTCGCGCTTCTTCCAGTTGCTCAGCGGTGTCCACCGATAGCGAATCCGCCTCCACCGGGAAGCTGCCAAT
GGCGATGCCTGCTTCCAGCA

Product: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase

Products: NA

Alternate protein names: KDO 8-P phosphatase [H]

Number of amino acids: Translated: 177; Mature: 176

Protein sequence:

>177_residues
MSRLSQSLRGLELLVLDVDGVLTDGGLSYAPDGQVWRRFDVRDGLGLKLLQQAGITLAVISGGRSGAIERRAQDLGIEHC
FTEVRDKQAQLGQLQQQLQVLPAATGFVGDDLNDLVVRSQVGVMAAPADACKALRRQADLVLRRRGGHGAVRELAERILK
ARGEWTALAAGGWRQRN

Sequences:

>Translated_177_residues
MSRLSQSLRGLELLVLDVDGVLTDGGLSYAPDGQVWRRFDVRDGLGLKLLQQAGITLAVISGGRSGAIERRAQDLGIEHC
FTEVRDKQAQLGQLQQQLQVLPAATGFVGDDLNDLVVRSQVGVMAAPADACKALRRQADLVLRRRGGHGAVRELAERILK
ARGEWTALAAGGWRQRN
>Mature_176_residues
SRLSQSLRGLELLVLDVDGVLTDGGLSYAPDGQVWRRFDVRDGLGLKLLQQAGITLAVISGGRSGAIERRAQDLGIEHCF
TEVRDKQAQLGQLQQQLQVLPAATGFVGDDLNDLVVRSQVGVMAAPADACKALRRQADLVLRRRGGHGAVRELAERILKA
RGEWTALAAGGWRQRN

Specific function: Catalyzes the hydrolysis of KDO 8-P to KDO and inorganic phosphate [H]

COG id: COG1778

COG function: function code R; Low specificity phosphatase (HAD superfamily)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the kdsC family [H]

Homologues:

Organism=Homo sapiens, GI8923900, Length=155, Percent_Identity=29.0322580645161, Blast_Score=81, Evalue=5e-16,
Organism=Escherichia coli, GI2367202, Length=156, Percent_Identity=38.4615384615385, Blast_Score=107, Evalue=5e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023214
- InterPro:   IPR013200
- InterPro:   IPR006549
- InterPro:   IPR010023 [H]

Pfam domain/function: PF08282 Hydrolase_3 [H]

EC number: =3.1.3.45 [H]

Molecular weight: Translated: 19189; Mature: 19058

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRLSQSLRGLELLVLDVDGVLTDGGLSYAPDGQVWRRFDVRDGLGLKLLQQAGITLAVI
CCHHHHHHCCEEEEEEECCCEEECCCCCCCCCCHHHEEECCCCCCHHHHHHHCCCEEEEE
SGGRSGAIERRAQDLGIEHCFTEVRDKQAQLGQLQQQLQVLPAATGFVGDDLNDLVVRSQ
ECCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
VGVMAAPADACKALRRQADLVLRRRGGHGAVRELAERILKARGEWTALAAGGWRQRN
CCCEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC
>Mature Secondary Structure 
SRLSQSLRGLELLVLDVDGVLTDGGLSYAPDGQVWRRFDVRDGLGLKLLQQAGITLAVI
CHHHHHHCCEEEEEEECCCEEECCCCCCCCCCHHHEEECCCCCCHHHHHHHCCCEEEEE
SGGRSGAIERRAQDLGIEHCFTEVRDKQAQLGQLQQQLQVLPAATGFVGDDLNDLVVRSQ
ECCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
VGVMAAPADACKALRRQADLVLRRRGGHGAVRELAERILKARGEWTALAAGGWRQRN
CCCEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 12639950; 11835514 [H]