| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
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The map label for this gene is flbA [H]
Identifier: 148241365
GI number: 148241365
Start: 269055
End: 271070
Strand: Direct
Name: flbA [H]
Synonym: SynRCC307_0266
Alternate gene names: 148241365
Gene position: 269055-271070 (Clockwise)
Preceding gene: 148241364
Following gene: 148241366
Centisome position: 12.09
GC content: 53.12
Gene sequence:
>2016_bases GTGACTTATTCTTATTTTTCCGGCGCAAGAGCTTTGGATTCGGCACTTCGCGCGTTGTTCGAAGCCGGTGAGTGGAGACA ACTGATTGTTGCTTTGGATGAAACAGAATTGGATCAAAAAAATGATCCTGAATTGTGGTTTTTACTCGGTAAAGCCCATC GTGAATTGGGTCAAGCTGAGCTCGGGTTTGATGCGTTTGCGAAGGCTCTTCAGCTTGATCCCGTCAGCCCATTGCTGCGC TTAGAAGCGGTTGAGGCCTTGCTGTCATGTAATGAGTGGGCTCTGGCGCGTCAATTGCTGCAGCAGCCAGCTGGGGCGAT AGCTGCTCAGCTTCCGCTGGGCAGGTGGGCTCTGGCGCGCTGTGCTTCGCGATTGGGAGAGCCCAACCAAGCTGAAAGTC AGCTCATGGGTTTGCAGGCTGATGGTGGCTTGGATTTAGAACGGCTGGGCGTTGGTTTGAGTGAATGCAATTTGCTGCTG GGTGATCTAGATCGCGCTCGATTTTGCCTTGATCGCTTGTTTGAACTGGCTCCCCATCATGTTGATGGCTTGCTATTAGA AGTTGAGTTGCTTCGCGCCAAGCCTTCAGTTGATTTTGCTGGTTCGGTTGATGCTCTATTAAGCCGCTCTCCAGGGTCAA GGCGTTTGCAACTTGCCTGCGCAGAAGCCCTTTTTGATTGGAAAGAACCAGATCAGGCCGATGATCTCTTTCAGGCAGCG ATTCGGCAGCATGGCCTTGCTGGTCGATTGGTGAATGGCTATGTGCGCATGCTTGTATCGACCTACCGCTTGGATGCTTT AAAGCAGGCCAAGCAGCAGTGCAATGCCCCATATCCTCCGCTGCAATTTGAGATTTTAGAAGCAAAATGTTTGATTGGTT TGAATCGTTGGGCTGAGGCAATTGCTGCCTTGCAAGCACTGCCCATGCAGTTTTCAACGGCCTATCTGCTGTGTCAGATC TATCGGCATTCCGGTCAGTTTGATCAGTCGTTGGCGCTTGCTTTGCAGCTGCCGCAATTGGCTGGCCTAAACCCTGATCG TGGGTATGACGCAGCGATGGAGCTGCTGGCTTTAGGCCAGTGGCAGCTGGGATGGTCGTTGTATGAGAATCGTTTTTTTG GAGCCTCCAAGCGCTTCATTACTCCTGCTGGAGTTGAGCCGCGGATGTCTCAAGAATTGCCCCATGCTCAGCAGGTCATT GTCTTTAGTGAACAAGGCATTGGTGACAGCATCATGATGGCATCGATGCTTCCCGATCTTCAGGCTGTTGCGGCTGATCT CACGGTTTTAGTTCAGCCGCGATTGATGAGTTTATTTGTTCATTCGTTTCCTGATCTGCGGATCTGTTCGTCGATCGATG AATCTATCTTTCGCTCGGCTGATCGTTGTTATGGCCTTGGCAGTCTTGGTCAGTTTTTTAGGCCCAAGCCGGAGCATTGT CCTGGCACACCTTTTTTGGCTGTGCCTGATCAAGAAACCCTGCGCTGGCGGCAACAGCTCCAACGTCTCCCTCCAGGTCG ACGTGTTGGTGTTGCTTGGTTTGGCGGCGGGCTGGTGGAGACGGCCCAGCATCGATCGATTCCCTTAACCCAGCTCCTGC CTCTGCTCCAAGTTGAGGGAGTGAACTGGGTCAACCTTCAGTACAACCACGACCCAACGGAGCTGGATCAACTGGCCAGG GAGCATGGGGTGCAGATTCATCATTTCGAGGGCGTCACCGCTGATTTGCAGGCAACAGCCGCCCTAACGGCCCAATTGGA TCTTGTGATCACTGTGCAGCAGACCGCTGCTCATATCGCCGGTGCCATTGGCACGCCCGCCTGGGTGCTGTTGCCTCGCT CTGCTGAGTGGCGGTATGGCATGCAAGGCTCCCAAATGCCCTGGTACAACTCAGTTGAGCTGTTTCGTCAAAGCAGCCCT GGCGATTGGAATGTTCCGATCAAAGCAATACAAAGCCGTCTGGGAGCTTGGCTAGCTGAGCCCGCTAGCCAGAATGAAGG GCAACAGCTGAGCTGA
Upstream 100 bases:
>100_bases TGATCTCCGTTCTCGACGCTTTTACTCCTCACCACAACACCTCCCACACAGATCACAAGCCCCTCCGAAAGGAGGGGCTT TTTTTTGATCCAGCATTGAT
Downstream 100 bases:
>100_bases CGCCCTGCGATGGCGATTGCCCCGGACATCACCACCTTGGTTGGCCGCACGCCCTTGGTGCGGCTCAACCGTCTCCCCGC AGAAGAGAACTGCAAGGCTG
Product: TPR repeat-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 671; Mature: 670
Protein sequence:
>671_residues MTYSYFSGARALDSALRALFEAGEWRQLIVALDETELDQKNDPELWFLLGKAHRELGQAELGFDAFAKALQLDPVSPLLR LEAVEALLSCNEWALARQLLQQPAGAIAAQLPLGRWALARCASRLGEPNQAESQLMGLQADGGLDLERLGVGLSECNLLL GDLDRARFCLDRLFELAPHHVDGLLLEVELLRAKPSVDFAGSVDALLSRSPGSRRLQLACAEALFDWKEPDQADDLFQAA IRQHGLAGRLVNGYVRMLVSTYRLDALKQAKQQCNAPYPPLQFEILEAKCLIGLNRWAEAIAALQALPMQFSTAYLLCQI YRHSGQFDQSLALALQLPQLAGLNPDRGYDAAMELLALGQWQLGWSLYENRFFGASKRFITPAGVEPRMSQELPHAQQVI VFSEQGIGDSIMMASMLPDLQAVAADLTVLVQPRLMSLFVHSFPDLRICSSIDESIFRSADRCYGLGSLGQFFRPKPEHC PGTPFLAVPDQETLRWRQQLQRLPPGRRVGVAWFGGGLVETAQHRSIPLTQLLPLLQVEGVNWVNLQYNHDPTELDQLAR EHGVQIHHFEGVTADLQATAALTAQLDLVITVQQTAAHIAGAIGTPAWVLLPRSAEWRYGMQGSQMPWYNSVELFRQSSP GDWNVPIKAIQSRLGAWLAEPASQNEGQQLS
Sequences:
>Translated_671_residues MTYSYFSGARALDSALRALFEAGEWRQLIVALDETELDQKNDPELWFLLGKAHRELGQAELGFDAFAKALQLDPVSPLLR LEAVEALLSCNEWALARQLLQQPAGAIAAQLPLGRWALARCASRLGEPNQAESQLMGLQADGGLDLERLGVGLSECNLLL GDLDRARFCLDRLFELAPHHVDGLLLEVELLRAKPSVDFAGSVDALLSRSPGSRRLQLACAEALFDWKEPDQADDLFQAA IRQHGLAGRLVNGYVRMLVSTYRLDALKQAKQQCNAPYPPLQFEILEAKCLIGLNRWAEAIAALQALPMQFSTAYLLCQI YRHSGQFDQSLALALQLPQLAGLNPDRGYDAAMELLALGQWQLGWSLYENRFFGASKRFITPAGVEPRMSQELPHAQQVI VFSEQGIGDSIMMASMLPDLQAVAADLTVLVQPRLMSLFVHSFPDLRICSSIDESIFRSADRCYGLGSLGQFFRPKPEHC PGTPFLAVPDQETLRWRQQLQRLPPGRRVGVAWFGGGLVETAQHRSIPLTQLLPLLQVEGVNWVNLQYNHDPTELDQLAR EHGVQIHHFEGVTADLQATAALTAQLDLVITVQQTAAHIAGAIGTPAWVLLPRSAEWRYGMQGSQMPWYNSVELFRQSSP GDWNVPIKAIQSRLGAWLAEPASQNEGQQLS >Mature_670_residues TYSYFSGARALDSALRALFEAGEWRQLIVALDETELDQKNDPELWFLLGKAHRELGQAELGFDAFAKALQLDPVSPLLRL EAVEALLSCNEWALARQLLQQPAGAIAAQLPLGRWALARCASRLGEPNQAESQLMGLQADGGLDLERLGVGLSECNLLLG DLDRARFCLDRLFELAPHHVDGLLLEVELLRAKPSVDFAGSVDALLSRSPGSRRLQLACAEALFDWKEPDQADDLFQAAI RQHGLAGRLVNGYVRMLVSTYRLDALKQAKQQCNAPYPPLQFEILEAKCLIGLNRWAEAIAALQALPMQFSTAYLLCQIY RHSGQFDQSLALALQLPQLAGLNPDRGYDAAMELLALGQWQLGWSLYENRFFGASKRFITPAGVEPRMSQELPHAQQVIV FSEQGIGDSIMMASMLPDLQAVAADLTVLVQPRLMSLFVHSFPDLRICSSIDESIFRSADRCYGLGSLGQFFRPKPEHCP GTPFLAVPDQETLRWRQQLQRLPPGRRVGVAWFGGGLVETAQHRSIPLTQLLPLLQVEGVNWVNLQYNHDPTELDQLARE HGVQIHHFEGVTADLQATAALTAQLDLVITVQQTAAHIAGAIGTPAWVLLPRSAEWRYGMQGSQMPWYNSVELFRQSSPG DWNVPIKAIQSRLGAWLAEPASQNEGQQLS
Specific function: Unknown
COG id: COG0457
COG function: function code R; FOG: TPR repeat
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 4 TPR repeats [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013026 - InterPro: IPR011990 - InterPro: IPR019734 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 74296; Mature: 74165
Theoretical pI: Translated: 5.10; Mature: 5.10
Prosite motif: PS50005 TPR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTYSYFSGARALDSALRALFEAGEWRQLIVALDETELDQKNDPELWFLLGKAHRELGQAE CCCCHHCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEEEEHHHHHHCCHH LGFDAFAKALQLDPVSPLLRLEAVEALLSCNEWALARQLLQQPAGAIAAQLPLGRWALAR CCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHCCCHHHHHHH CASRLGEPNQAESQLMGLQADGGLDLERLGVGLSECNLLLGDLDRARFCLDRLFELAPHH HHHHCCCCCCHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHH VDGLLLEVELLRAKPSVDFAGSVDALLSRSPGSRRLQLACAEALFDWKEPDQADDLFQAA HCCEEEEEHHHHCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH IRQHGLAGRLVNGYVRMLVSTYRLDALKQAKQQCNAPYPPLQFEILEAKCLIGLNRWAEA HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHH IAALQALPMQFSTAYLLCQIYRHSGQFDQSLALALQLPQLAGLNPDRGYDAAMELLALGQ HHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHCCCCCCCCHHHHHHHHHCCC WQLGWSLYENRFFGASKRFITPAGVEPRMSQELPHAQQVIVFSEQGIGDSIMMASMLPDL HHHHHHHHHHHHCCCCCCEECCCCCCCCHHHCCCCCCEEEEEECCCCCHHHHHHHHCCHH QAVAADLTVLVQPRLMSLFVHSFPDLRICSSIDESIFRSADRCYGLGSLGQFFRPKPEHC HHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCC PGTPFLAVPDQETLRWRQQLQRLPPGRRVGVAWFGGGLVETAQHRSIPLTQLLPLLQVEG CCCCEEECCCHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHCCCCCHHHHHHHHHCCC VNWVNLQYNHDPTELDQLAREHGVQIHHFEGVTADLQATAALTAQLDLVITVQQTAAHIA CCEEEEEECCCHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHEEEEEEEEEEHHHHHHHH GAIGTPAWVLLPRSAEWRYGMQGSQMPWYNSVELFRQSSPGDWNVPIKAIQSRLGAWLAE HCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCC PASQNEGQQLS CCCCCCCCCCC >Mature Secondary Structure TYSYFSGARALDSALRALFEAGEWRQLIVALDETELDQKNDPELWFLLGKAHRELGQAE CCCHHCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEEEEHHHHHHCCHH LGFDAFAKALQLDPVSPLLRLEAVEALLSCNEWALARQLLQQPAGAIAAQLPLGRWALAR CCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHCCCHHHHHHH CASRLGEPNQAESQLMGLQADGGLDLERLGVGLSECNLLLGDLDRARFCLDRLFELAPHH HHHHCCCCCCHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHH VDGLLLEVELLRAKPSVDFAGSVDALLSRSPGSRRLQLACAEALFDWKEPDQADDLFQAA HCCEEEEEHHHHCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH IRQHGLAGRLVNGYVRMLVSTYRLDALKQAKQQCNAPYPPLQFEILEAKCLIGLNRWAEA HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHH IAALQALPMQFSTAYLLCQIYRHSGQFDQSLALALQLPQLAGLNPDRGYDAAMELLALGQ HHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHCCCCCCCCHHHHHHHHHCCC WQLGWSLYENRFFGASKRFITPAGVEPRMSQELPHAQQVIVFSEQGIGDSIMMASMLPDL HHHHHHHHHHHHCCCCCCEECCCCCCCCHHHCCCCCCEEEEEECCCCCHHHHHHHHCCHH QAVAADLTVLVQPRLMSLFVHSFPDLRICSSIDESIFRSADRCYGLGSLGQFFRPKPEHC HHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCC PGTPFLAVPDQETLRWRQQLQRLPPGRRVGVAWFGGGLVETAQHRSIPLTQLLPLLQVEG CCCCEEECCCHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHCCCCCHHHHHHHHHCCC VNWVNLQYNHDPTELDQLAREHGVQIHHFEGVTADLQATAALTAQLDLVITVQQTAAHIA CCEEEEEECCCHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHEEEEEEEEEEHHHHHHHH GAIGTPAWVLLPRSAEWRYGMQGSQMPWYNSVELFRQSSPGDWNVPIKAIQSRLGAWLAE HCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCC PASQNEGQQLS CCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9748431; 11259647; 1699845 [H]