| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
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The map label for this gene is crtB [H]
Identifier: 148241338
GI number: 148241338
Start: 239305
End: 240234
Strand: Direct
Name: crtB [H]
Synonym: SynRCC307_0239
Alternate gene names: 148241338
Gene position: 239305-240234 (Clockwise)
Preceding gene: 148241337
Following gene: 148241342
Centisome position: 10.76
GC content: 64.19
Gene sequence:
>930_bases ATGGTCTTAAGCCCGCCTGCTCCTGCGCTTGGGGTTCCTGCCCTTGAGCAGGCCTATGAGGACTGCCGGGTTGAAACCGA GCGCTGGGCCAAGACGTTTTATCTAGGCACCTTGCTGATGCCGCCGGCCAAGCGGCGGGCGATTTGGGCGATCTACGTGT GGTGCCGGCGCACCGATGAGCTGATGGACAGCCCCGAGGCCCAGGCCTTGCCGGTGGCTGAACTCAGCGCCCGTTTGGAT GCCTGGGAGCAGCGCACCCGCGAGTTGTTCGCAGGCCAGGTGCGTGATGGCCTCGATCGGGTGATGGCCGATGTGATCGA GCACTACCCCCAGCCTCTCGAGGCCTACCTCGAGATGATCGAGGGCCAGCGCATGGATCTGGCCAAGCACCGTTATTCCG ATTTCGCCGAGCTCAAGCAGTACTGCTTCCGGGTGGCCGGCACCGTTGGCCTGATGACCCAAGAGGTGATGGGCCTCGAT CCGGCTTACACCACAGCCCCTTGGAGCGAACGCCCGGATACCAGCGAAGCGGCTGTGGCCTTGGGTATCGCCAACCAGCT CACCAACATCTTGCGGGATGTGGGTGAAGACCGCGGCCGCGGCCGTATCTACTTGCCCCAGGAAGACCTGCAGCGCTTTG GCTATTCCGAAGCCGAGCTGATGGCCGGCACCCTCAATGAGAATTGGCGCGCCTTGATGGCCTTCCAGCTGGAGCGGGCT CGCGACTGGTTTGCCCGCTCTGAGGCTGGGGTGCGCTGGCTGGCGCCAGATGCCCGTTGGCCGGTGTGGACCTCGTTGCG GCTCTACCGCGGCATCCTCGATGCCATCGAGCGCCTCAACTACGACGTGTTCAACCACCGCGCCTATGTGCCGCGGGTGG GGAAGTTGATGGACCTGCCGCTGTCTTATCTGATCGCGCAGGCCCGCTAG
Upstream 100 bases:
>100_bases CTTCATGGCCGGTGACTACACCCTGCAGCGCTACCTGGCCTCGATGGAGGGTGCAGTGCTCAGCGGTAAGCTCTGCGCCG AAGCCGTGGCGGCCTGAAGC
Downstream 100 bases:
>100_bases GCGGCTAGCCAGCGCTGCAGCACTGGGTTGACCTGTTCTGGTGCTTCGTCGTGGGGGCAGTGGCCCACGCCGGGCAGCTC ATGCAGCTCTTGGATGCAGC
Product: phytoene synthase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 309; Mature: 309
Protein sequence:
>309_residues MVLSPPAPALGVPALEQAYEDCRVETERWAKTFYLGTLLMPPAKRRAIWAIYVWCRRTDELMDSPEAQALPVAELSARLD AWEQRTRELFAGQVRDGLDRVMADVIEHYPQPLEAYLEMIEGQRMDLAKHRYSDFAELKQYCFRVAGTVGLMTQEVMGLD PAYTTAPWSERPDTSEAAVALGIANQLTNILRDVGEDRGRGRIYLPQEDLQRFGYSEAELMAGTLNENWRALMAFQLERA RDWFARSEAGVRWLAPDARWPVWTSLRLYRGILDAIERLNYDVFNHRAYVPRVGKLMDLPLSYLIAQAR
Sequences:
>Translated_309_residues MVLSPPAPALGVPALEQAYEDCRVETERWAKTFYLGTLLMPPAKRRAIWAIYVWCRRTDELMDSPEAQALPVAELSARLD AWEQRTRELFAGQVRDGLDRVMADVIEHYPQPLEAYLEMIEGQRMDLAKHRYSDFAELKQYCFRVAGTVGLMTQEVMGLD PAYTTAPWSERPDTSEAAVALGIANQLTNILRDVGEDRGRGRIYLPQEDLQRFGYSEAELMAGTLNENWRALMAFQLERA RDWFARSEAGVRWLAPDARWPVWTSLRLYRGILDAIERLNYDVFNHRAYVPRVGKLMDLPLSYLIAQAR >Mature_309_residues MVLSPPAPALGVPALEQAYEDCRVETERWAKTFYLGTLLMPPAKRRAIWAIYVWCRRTDELMDSPEAQALPVAELSARLD AWEQRTRELFAGQVRDGLDRVMADVIEHYPQPLEAYLEMIEGQRMDLAKHRYSDFAELKQYCFRVAGTVGLMTQEVMGLD PAYTTAPWSERPDTSEAAVALGIANQLTNILRDVGEDRGRGRIYLPQEDLQRFGYSEAELMAGTLNENWRALMAFQLERA RDWFARSEAGVRWLAPDARWPVWTSLRLYRGILDAIERLNYDVFNHRAYVPRVGKLMDLPLSYLIAQAR
Specific function: Catalyzes the reaction from prephytoene diphosphate to phytoene [H]
COG id: COG1562
COG function: function code I; Phytoene/squalene synthetase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phytoene/squalene synthase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002060 - InterPro: IPR019845 - InterPro: IPR008949 [H]
Pfam domain/function: PF00494 SQS_PSY [H]
EC number: =2.5.1.32 [H]
Molecular weight: Translated: 35504; Mature: 35504
Theoretical pI: Translated: 5.02; Mature: 5.02
Prosite motif: PS01045 SQUALEN_PHYTOEN_SYN_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVLSPPAPALGVPALEQAYEDCRVETERWAKTFYLGTLLMPPAKRRAIWAIYVWCRRTDE CCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHEEEHHHHHHHHHH LMDSPEAQALPVAELSARLDAWEQRTRELFAGQVRDGLDRVMADVIEHYPQPLEAYLEMI HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH EGQRMDLAKHRYSDFAELKQYCFRVAGTVGLMTQEVMGLDPAYTTAPWSERPDTSEAAVA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH LGIANQLTNILRDVGEDRGRGRIYLPQEDLQRFGYSEAELMAGTLNENWRALMAFQLERA HHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHH RDWFARSEAGVRWLAPDARWPVWTSLRLYRGILDAIERLNYDVFNHRAYVPRVGKLMDLP HHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHH LSYLIAQAR HHHHHHCCC >Mature Secondary Structure MVLSPPAPALGVPALEQAYEDCRVETERWAKTFYLGTLLMPPAKRRAIWAIYVWCRRTDE CCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHEEEHHHHHHHHHH LMDSPEAQALPVAELSARLDAWEQRTRELFAGQVRDGLDRVMADVIEHYPQPLEAYLEMI HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH EGQRMDLAKHRYSDFAELKQYCFRVAGTVGLMTQEVMGLDPAYTTAPWSERPDTSEAAVA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH LGIANQLTNILRDVGEDRGRGRIYLPQEDLQRFGYSEAELMAGTLNENWRALMAFQLERA HHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHH RDWFARSEAGVRWLAPDARWPVWTSLRLYRGILDAIERLNYDVFNHRAYVPRVGKLMDLP HHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHH LSYLIAQAR HHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1537409 [H]