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The map label for this gene is pds [H]

Identifier: 148241337

GI number: 148241337

Start: 237901

End: 239301

Strand: Direct

Name: pds [H]

Synonym: SynRCC307_0238

Alternate gene names: 148241337

Gene position: 237901-239301 (Clockwise)

Preceding gene: 148241334

Following gene: 148241338

Centisome position: 10.69

GC content: 61.1

Gene sequence:

>1401_bases
ATGGTGAGCCCTCAATGTGCGACGGGCGCGACGATGCGGGTGGCAATTGCTGGAGCCGGCCTTGCTGGGCTCTCCTGTGC
CAAATACCTCAGTGATGCCGGCCATACGCCGGTTGTGGTGGAAGCCCGCAACGTGTTGGGCGGCAAGGTGGCGGCCTGGC
AAGACCAAGACGGTGATTGGTATGAGACCGGCCTGCATATCTTTTTCGGTGCTTACCCGAACATGCTCCAGCTCTTCAAG
GAGCTGAACATCGAGGAGCGGCTGCAGTGGAAGAGCCACTCGATGATCTTCAACCAACAGGAGGTCCCGGGCACCTACAG
CCGTTTTGATTTTCCGGACCTGCCGGCTCCCATCAATGGTGTGGCTGCCATCTTGGGCAACAACGACATGCTCAGCTGGC
CCGAAAAGATCAGCTTTGGCTTGGGTTTGGTGCCAGCGATGCTGCGCGGCCAGGGCTACGTGGAGGAGTGCGACAAGTAC
TCCTGGACCGAGTGGCTCCAGCTCCACAACATCCCTGAGCGGGTGAACGATGAGGTGTTCCTTGCCATGAGCAAGGCGCT
GAACTTCATCGACCCCGATGAGATCTCCAGCACCGTGGTCCTCACCGCTCTGAACCGTTTCCTGCAGGAAAAGAACGGCT
CGAAAATGGCGTTCCTCGATGGCAACCCGCCGGAGCGCCTCTGCCAGCCGATGGTTGAGCACATTGAATCCAAAGGCGGT
GAGGTGCATCTGGAATCGCCCCTGCGGGAGATCGAGCTGAATGCCGACGGCTCAGTGGCGGGCTTCCGCATCGGTGGTGT
GGCCGGGAAGGAGCCCTACACGCTCACCGCTGATGCCTATGTGAGCGCGATGCCGGTGGATCCCTTCAAGTTGCTGCTGC
CGGAGCCCTGGAAGCAGATGCCCTTCTTCAGCAAGCTGGATGGCCTGCGAGGGGTGCCGGTGATCAACATCCACCTCTGG
TTTGACCGCAAGCTCACCGAGATCGATCACCTGCTGTTCAGCCGCTCGCCCCTGCTCAGCGTGTATGCCGACATGAGCAA
CACCTGCCGCGAATACGAAGACGCTGAGCGCTCGATGCTGGAGCTGGTGTTTGCACCGGCCAAGGATTGGATCGGCCGCC
CGGATGAAGAGATCGTGGACGCCACGATGAAGGAGCTCGAGCGCCTCTTCCCGCAGCATTTCGGCTCTGAGAACCCGGCC
GTGCTGCGCAAGAGCAAGGTGGTGAAGACCCCGCTGTCGGTCTACAAAACCGTTCCCAACTGCCAGCCCCTGCGGCCGAC
ACAGAAGACACCGGTGCCCAACTTCTTCATGGCCGGTGACTACACCCTGCAGCGCTACCTGGCCTCGATGGAGGGTGCAG
TGCTCAGCGGTAAGCTCTGCGCCGAAGCCGTGGCGGCCTGA

Upstream 100 bases:

>100_bases
TTGTCTTCCACCGTGGCGGTGAAAATCCGCACATGGCGGGTGGTGCACTTCAGCGGGGTATCAGACACCTCAACAAGTCA
GCGGGCATGGCCTCAACTCT

Downstream 100 bases:

>100_bases
AGCATGGTCTTAAGCCCGCCTGCTCCTGCGCTTGGGGTTCCTGCCCTTGAGCAGGCCTATGAGGACTGCCGGGTTGAAAC
CGAGCGCTGGGCCAAGACGT

Product: phytoene dehydrogenase

Products: NA

Alternate protein names: Phytoene desaturase [H]

Number of amino acids: Translated: 466; Mature: 466

Protein sequence:

>466_residues
MVSPQCATGATMRVAIAGAGLAGLSCAKYLSDAGHTPVVVEARNVLGGKVAAWQDQDGDWYETGLHIFFGAYPNMLQLFK
ELNIEERLQWKSHSMIFNQQEVPGTYSRFDFPDLPAPINGVAAILGNNDMLSWPEKISFGLGLVPAMLRGQGYVEECDKY
SWTEWLQLHNIPERVNDEVFLAMSKALNFIDPDEISSTVVLTALNRFLQEKNGSKMAFLDGNPPERLCQPMVEHIESKGG
EVHLESPLREIELNADGSVAGFRIGGVAGKEPYTLTADAYVSAMPVDPFKLLLPEPWKQMPFFSKLDGLRGVPVINIHLW
FDRKLTEIDHLLFSRSPLLSVYADMSNTCREYEDAERSMLELVFAPAKDWIGRPDEEIVDATMKELERLFPQHFGSENPA
VLRKSKVVKTPLSVYKTVPNCQPLRPTQKTPVPNFFMAGDYTLQRYLASMEGAVLSGKLCAEAVAA

Sequences:

>Translated_466_residues
MVSPQCATGATMRVAIAGAGLAGLSCAKYLSDAGHTPVVVEARNVLGGKVAAWQDQDGDWYETGLHIFFGAYPNMLQLFK
ELNIEERLQWKSHSMIFNQQEVPGTYSRFDFPDLPAPINGVAAILGNNDMLSWPEKISFGLGLVPAMLRGQGYVEECDKY
SWTEWLQLHNIPERVNDEVFLAMSKALNFIDPDEISSTVVLTALNRFLQEKNGSKMAFLDGNPPERLCQPMVEHIESKGG
EVHLESPLREIELNADGSVAGFRIGGVAGKEPYTLTADAYVSAMPVDPFKLLLPEPWKQMPFFSKLDGLRGVPVINIHLW
FDRKLTEIDHLLFSRSPLLSVYADMSNTCREYEDAERSMLELVFAPAKDWIGRPDEEIVDATMKELERLFPQHFGSENPA
VLRKSKVVKTPLSVYKTVPNCQPLRPTQKTPVPNFFMAGDYTLQRYLASMEGAVLSGKLCAEAVAA
>Mature_466_residues
MVSPQCATGATMRVAIAGAGLAGLSCAKYLSDAGHTPVVVEARNVLGGKVAAWQDQDGDWYETGLHIFFGAYPNMLQLFK
ELNIEERLQWKSHSMIFNQQEVPGTYSRFDFPDLPAPINGVAAILGNNDMLSWPEKISFGLGLVPAMLRGQGYVEECDKY
SWTEWLQLHNIPERVNDEVFLAMSKALNFIDPDEISSTVVLTALNRFLQEKNGSKMAFLDGNPPERLCQPMVEHIESKGG
EVHLESPLREIELNADGSVAGFRIGGVAGKEPYTLTADAYVSAMPVDPFKLLLPEPWKQMPFFSKLDGLRGVPVINIHLW
FDRKLTEIDHLLFSRSPLLSVYADMSNTCREYEDAERSMLELVFAPAKDWIGRPDEEIVDATMKELERLFPQHFGSENPA
VLRKSKVVKTPLSVYKTVPNCQPLRPTQKTPVPNFFMAGDYTLQRYLASMEGAVLSGKLCAEAVAA

Specific function: This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene [H]

COG id: COG3349

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002937
- InterPro:   IPR014102 [H]

Pfam domain/function: PF01593 Amino_oxidase [H]

EC number: 1.3.99.-

Molecular weight: Translated: 51863; Mature: 51863

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSPQCATGATMRVAIAGAGLAGLSCAKYLSDAGHTPVVVEARNVLGGKVAAWQDQDGDW
CCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCCEEEEECHHCCCCEEEEECCCCCH
YETGLHIFFGAYPNMLQLFKELNIEERLQWKSHSMIFNQQEVPGTYSRFDFPDLPAPING
HHCCEEEEECCCHHHHHHHHHCCHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCC
VAAILGNNDMLSWPEKISFGLGLVPAMLRGQGYVEECDKYSWTEWLQLHNIPERVNDEVF
EEEEECCCCCCCCHHHHHHCHHHHHHHHCCCCCHHHHHCCCHHHHHHHCCCHHHHCCHHH
LAMSKALNFIDPDEISSTVVLTALNRFLQEKNGSKMAFLDGNPPERLCQPMVEHIESKGG
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCC
EVHLESPLREIELNADGSVAGFRIGGVAGKEPYTLTADAYVSAMPVDPFKLLLPEPWKQM
EEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEECCCEEEECCCCHHHHCCCCCHHHC
PFFSKLDGLRGVPVINIHLWFDRKLTEIDHLLFSRSPLLSVYADMSNTCREYEDAERSML
CCHHHHCCCCCCCEEEEEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
ELVFAPAKDWIGRPDEEIVDATMKELERLFPQHFGSENPAVLRKSKVVKTPLSVYKTVPN
HHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHCCCC
CQPLRPTQKTPVPNFFMAGDYTLQRYLASMEGAVLSGKLCAEAVAA
CCCCCCCCCCCCCCEEECCCHHHHHHHHHHCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MVSPQCATGATMRVAIAGAGLAGLSCAKYLSDAGHTPVVVEARNVLGGKVAAWQDQDGDW
CCCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCCCEEEEECHHCCCCEEEEECCCCCH
YETGLHIFFGAYPNMLQLFKELNIEERLQWKSHSMIFNQQEVPGTYSRFDFPDLPAPING
HHCCEEEEECCCHHHHHHHHHCCHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCC
VAAILGNNDMLSWPEKISFGLGLVPAMLRGQGYVEECDKYSWTEWLQLHNIPERVNDEVF
EEEEECCCCCCCCHHHHHHCHHHHHHHHCCCCCHHHHHCCCHHHHHHHCCCHHHHCCHHH
LAMSKALNFIDPDEISSTVVLTALNRFLQEKNGSKMAFLDGNPPERLCQPMVEHIESKGG
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCC
EVHLESPLREIELNADGSVAGFRIGGVAGKEPYTLTADAYVSAMPVDPFKLLLPEPWKQM
EEEECCCCEEEEECCCCCEEEEEECCCCCCCCEEEECCCEEEECCCCHHHHCCCCCHHHC
PFFSKLDGLRGVPVINIHLWFDRKLTEIDHLLFSRSPLLSVYADMSNTCREYEDAERSML
CCHHHHCCCCCCCEEEEEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
ELVFAPAKDWIGRPDEEIVDATMKELERLFPQHFGSENPAVLRKSKVVKTPLSVYKTVPN
HHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHCCCC
CQPLRPTQKTPVPNFFMAGDYTLQRYLASMEGAVLSGKLCAEAVAA
CCCCCCCCCCCCCCEEECCCHHHHHHHHHHCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1907510 [H]