| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
Click here to switch to the map view.
The map label for this gene is wcaA [C]
Identifier: 148241304
GI number: 148241304
Start: 208620
End: 209447
Strand: Direct
Name: wcaA [C]
Synonym: SynRCC307_0205
Alternate gene names: 148241304
Gene position: 208620-209447 (Clockwise)
Preceding gene: 148241303
Following gene: 148241305
Centisome position: 9.38
GC content: 38.53
Gene sequence:
>828_bases GTGACCAGTTCTAATCAACCTCTGGTAAGCATAATTATTCCCTGCTTTAATTGTGCTTCCACTGTTCTTGAAAGCCTCCA AAGCGTTCAAAGTCAAACTTTTTCAAACTTTCAGTGCATAATTGTTGATGATTGCTCGACCGATCAGACTCAAGCATTGG TTATGAGCTTTATAGAAGGCGATTCTCGTTTTAGGTATTTAATTACGCAATCAAATCAGGGTGTTTCTTCTGCTAGGAAT CTTGCTCTTGATAACTGTTCTTCTCAATACATTGCCTTCCTAGACTCTGATGATCTTTGGCATCCAGAATTCTTGACCCT TGCACTTGATTATATGTCTACCAATTCCGCAAGATTCGTGTATTCACCAGTTTTGAGATTTATTGATAATGCAAAGAGAA CCGGCTTTGTTAAAGTGCCTCCGTTCCGTGTTTCTCTGAGTTCGCTTCTCACTAATAATCATATACCATTAGTCACGGCA GTCTTCGATGCGTCTTTACTTTCCCCAAGTTTAAGATTTACTCCTCAACGCCCCGAAGACTATATTTTTTGGATTCAACT ATTTACTCTTAATCCTAGCCTTGAGGGTTTCCGTTTCTCTAACTTACCACTTGGTTTTTATCGCGTCTCTCCTAAGCAAA GGTCTTCTAATAAGATTATAAATATTAAAAGAGCCTATTATGTTTACCGATCCGTTTGGCACTTTGGGTATGTAAAGTCT CTTTTTATGACCTTGGTTTATGTAGCTAATAGTTTGCTTGACTATATTTTCCAGTTTTCTGCTCCTCGTAATTTCCCATC TTCAGTTTTTCTTGGCCCGAACTCGTGA
Upstream 100 bases:
>100_bases ATCCTCTGCACGTCTGCCTGGACCAAAACCCAAGAACAGGCCATTCGTGCAGGCTCATGACCTTGACTTCTTAAATCTCT GATAATTCCCCCTTCGTTTT
Downstream 100 bases:
>100_bases AAGTTGCAATTACAGGCTCGTCAGGATTTGTTGGGTCTAACCTTGTTTCCTCTTTTATTGCCAATTCAATAGACTTTATT TGTATTGATCGTTTCCCCTT
Product: glycosyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 275; Mature: 274
Protein sequence:
>275_residues MTSSNQPLVSIIIPCFNCASTVLESLQSVQSQTFSNFQCIIVDDCSTDQTQALVMSFIEGDSRFRYLITQSNQGVSSARN LALDNCSSQYIAFLDSDDLWHPEFLTLALDYMSTNSARFVYSPVLRFIDNAKRTGFVKVPPFRVSLSSLLTNNHIPLVTA VFDASLLSPSLRFTPQRPEDYIFWIQLFTLNPSLEGFRFSNLPLGFYRVSPKQRSSNKIINIKRAYYVYRSVWHFGYVKS LFMTLVYVANSLLDYIFQFSAPRNFPSSVFLGPNS
Sequences:
>Translated_275_residues MTSSNQPLVSIIIPCFNCASTVLESLQSVQSQTFSNFQCIIVDDCSTDQTQALVMSFIEGDSRFRYLITQSNQGVSSARN LALDNCSSQYIAFLDSDDLWHPEFLTLALDYMSTNSARFVYSPVLRFIDNAKRTGFVKVPPFRVSLSSLLTNNHIPLVTA VFDASLLSPSLRFTPQRPEDYIFWIQLFTLNPSLEGFRFSNLPLGFYRVSPKQRSSNKIINIKRAYYVYRSVWHFGYVKS LFMTLVYVANSLLDYIFQFSAPRNFPSSVFLGPNS >Mature_274_residues TSSNQPLVSIIIPCFNCASTVLESLQSVQSQTFSNFQCIIVDDCSTDQTQALVMSFIEGDSRFRYLITQSNQGVSSARNL ALDNCSSQYIAFLDSDDLWHPEFLTLALDYMSTNSARFVYSPVLRFIDNAKRTGFVKVPPFRVSLSSLLTNNHIPLVTAV FDASLLSPSLRFTPQRPEDYIFWIQLFTLNPSLEGFRFSNLPLGFYRVSPKQRSSNKIINIKRAYYVYRSVWHFGYVKSL FMTLVYVANSLLDYIFQFSAPRNFPSSVFLGPNS
Specific function: Slime polysaccharide colanic acid biosynthesis. [C]
COG id: COG0463
COG function: function code M; Glycosyltransferases involved in cell wall biogenesis
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 2 family [H]
Homologues:
Organism=Escherichia coli, GI1788372, Length=108, Percent_Identity=37.037037037037, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1790044, Length=244, Percent_Identity=26.2295081967213, Blast_Score=72, Evalue=4e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 [H]
Pfam domain/function: PF00535 Glycos_transf_2 [H]
EC number: NA
Molecular weight: Translated: 31296; Mature: 31165
Theoretical pI: Translated: 8.44; Mature: 8.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSSNQPLVSIIIPCFNCASTVLESLQSVQSQTFSNFQCIIVDDCSTDQTQALVMSFIEG CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHCC DSRFRYLITQSNQGVSSARNLALDNCSSQYIAFLDSDDLWHPEFLTLALDYMSTNSARFV CCEEEEEEEECCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHHH YSPVLRFIDNAKRTGFVKVPPFRVSLSSLLTNNHIPLVTAVFDASLLSPSLRFTPQRPED HHHHHHHHHCCCCCCEEECCCHHHHHHHHHCCCCCCEEHEEHHHHHCCCCCCCCCCCCCC YIFWIQLFTLNPSLEGFRFSNLPLGFYRVSPKQRSSNKIINIKRAYYVYRSVWHFGYVKS EEEEEEEEEECCCCCCEEECCCCEEEEEECCCCCCCCCEEEEHHHHHHHHHHHHHHHHHH LFMTLVYVANSLLDYIFQFSAPRNFPSSVFLGPNS HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCC >Mature Secondary Structure TSSNQPLVSIIIPCFNCASTVLESLQSVQSQTFSNFQCIIVDDCSTDQTQALVMSFIEG CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHCC DSRFRYLITQSNQGVSSARNLALDNCSSQYIAFLDSDDLWHPEFLTLALDYMSTNSARFV CCEEEEEEEECCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCHHH YSPVLRFIDNAKRTGFVKVPPFRVSLSSLLTNNHIPLVTAVFDASLLSPSLRFTPQRPED HHHHHHHHHCCCCCCEEECCCHHHHHHHHHCCCCCCEEHEEHHHHHCCCCCCCCCCCCCC YIFWIQLFTLNPSLEGFRFSNLPLGFYRVSPKQRSSNKIINIKRAYYVYRSVWHFGYVKS EEEEEEEEEECCCCCCEEECCCCEEEEEECCCCCCCCCEEEEHHHHHHHHHHHHHHHHHH LFMTLVYVANSLLDYIFQFSAPRNFPSSVFLGPNS HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]