| Definition | Synechococcus sp. RCC307, complete genome. |
|---|---|
| Accession | NC_009482 |
| Length | 2,224,914 |
Click here to switch to the map view.
The map label for this gene is 148241201
Identifier: 148241201
GI number: 148241201
Start: 100196
End: 100954
Strand: Direct
Name: 148241201
Synonym: SynRCC307_0102
Alternate gene names: NA
Gene position: 100196-100954 (Clockwise)
Preceding gene: 148241200
Following gene: 148241202
Centisome position: 4.5
GC content: 39.92
Gene sequence:
>759_bases ATGCCTTACCTGATTAATCAAAAGCTTTTTTTTGTTCATATTCCAAAAACAGCGGGCTCATCAATTGAGAGAGCCTTTGG TGTTCACCCGTCGTGTAATAAAACAACCTCCAATTCATCTGCATCTTTGAGAAGTGGTCCATCACTTGTTAATGATGTCT TGCGCAAGACCATAAATCTTGGCTTAAGTTTTTTTGCCTCTTCGTCCAAGCATAAGGAAAAAAATAATTTCTTGATTGGT TATGACCAGCCCAGCCTTGTCCTTCAACACCTCACGTTGAGTGAAATGTTTTGGCTTGGGTATTTATCTCAAGCTGAATT ATCAAAGTCAACTTTTTTTTCTGTTGTTCGGCATCCGAAGGACCGCATAATATCTGCTTGGAGGTCACATCAAAGGCATG TCGAATTTCCTGACATCAATGATTTTATAGAATCCCGATTGAATTCTTTGAGCTGCACTACTCATGATGAGCGCGCTCAC ATTAGGCCAATGTCTCACTACCTTGATATTTCTAATCTTCCATGCCCAATCCGCTTACATGTCCTCAGGCTTGAAACCAT ACAAACTTGCTGGTCTTCTTTCGGCGAAAGAGTATTAAGAGACCCGTCTATTAATTTGCGCTCATGGCCTTCATTGCCTC ATTACGGCTCTAATCGAAGTCATGTTTCGCCTGTTTCAAATCAGTCACTAACTGTCAAATCAGCTGATTTAATTAAGAGG TATTATTCGTGTGATTATGAGAATTTTGCCTATCAATAG
Upstream 100 bases:
>100_bases CTAGGATCCGCGCTTCATTGCTATGGGATCAGGAATTAATAGCTGATCAATATGCCAAGCTGTATCAGATGCTCTCTCGG CAGCCAACTACTTAATTTAT
Downstream 100 bases:
>100_bases TCTCCTGCGTAGCGTTAATTTCGCTCCCTGTGTAACTAGCTATCTCCAGCTTTCTTTGTTGATCTGGTCTGAGCAATTTG GTCGTAAGGCTATCCCTTGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 252; Mature: 251
Protein sequence:
>252_residues MPYLINQKLFFVHIPKTAGSSIERAFGVHPSCNKTTSNSSASLRSGPSLVNDVLRKTINLGLSFFASSSKHKEKNNFLIG YDQPSLVLQHLTLSEMFWLGYLSQAELSKSTFFSVVRHPKDRIISAWRSHQRHVEFPDINDFIESRLNSLSCTTHDERAH IRPMSHYLDISNLPCPIRLHVLRLETIQTCWSSFGERVLRDPSINLRSWPSLPHYGSNRSHVSPVSNQSLTVKSADLIKR YYSCDYENFAYQ
Sequences:
>Translated_252_residues MPYLINQKLFFVHIPKTAGSSIERAFGVHPSCNKTTSNSSASLRSGPSLVNDVLRKTINLGLSFFASSSKHKEKNNFLIG YDQPSLVLQHLTLSEMFWLGYLSQAELSKSTFFSVVRHPKDRIISAWRSHQRHVEFPDINDFIESRLNSLSCTTHDERAH IRPMSHYLDISNLPCPIRLHVLRLETIQTCWSSFGERVLRDPSINLRSWPSLPHYGSNRSHVSPVSNQSLTVKSADLIKR YYSCDYENFAYQ >Mature_251_residues PYLINQKLFFVHIPKTAGSSIERAFGVHPSCNKTTSNSSASLRSGPSLVNDVLRKTINLGLSFFASSSKHKEKNNFLIGY DQPSLVLQHLTLSEMFWLGYLSQAELSKSTFFSVVRHPKDRIISAWRSHQRHVEFPDINDFIESRLNSLSCTTHDERAHI RPMSHYLDISNLPCPIRLHVLRLETIQTCWSSFGERVLRDPSINLRSWPSLPHYGSNRSHVSPVSNQSLTVKSADLIKRY YSCDYENFAYQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28885; Mature: 28754
Theoretical pI: Translated: 9.54; Mature: 9.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPYLINQKLFFVHIPKTAGSSIERAFGVHPSCNKTTSNSSASLRSGPSLVNDVLRKTINL CCEEECCEEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH GLSFFASSSKHKEKNNFLIGYDQPSLVLQHLTLSEMFWLGYLSQAELSKSTFFSVVRHPK HHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH DRIISAWRSHQRHVEFPDINDFIESRLNSLSCTTHDERAHIRPMSHYLDISNLPCPIRLH HHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHCCHHHHHCCCCCCCCCEEEE VLRLETIQTCWSSFGERVLRDPSINLRSWPSLPHYGSNRSHVSPVSNQSLTVKSADLIKR EHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHH YYSCDYENFAYQ HHHCCCHHCCCC >Mature Secondary Structure PYLINQKLFFVHIPKTAGSSIERAFGVHPSCNKTTSNSSASLRSGPSLVNDVLRKTINL CEEECCEEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH GLSFFASSSKHKEKNNFLIGYDQPSLVLQHLTLSEMFWLGYLSQAELSKSTFFSVVRHPK HHHHHHCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH DRIISAWRSHQRHVEFPDINDFIESRLNSLSCTTHDERAHIRPMSHYLDISNLPCPIRLH HHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHCCHHHHHCCCCCCCCCEEEE VLRLETIQTCWSSFGERVLRDPSINLRSWPSLPHYGSNRSHVSPVSNQSLTVKSADLIKR EHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHH YYSCDYENFAYQ HHHCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA