| Definition | Vibrio cholerae O395 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_009457 |
| Length | 3,024,069 |
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The map label for this gene is 147675684
Identifier: 147675684
GI number: 147675684
Start: 628571
End: 629806
Strand: Direct
Name: 147675684
Synonym: VC0395_A0589
Alternate gene names: NA
Gene position: 628571-629806 (Clockwise)
Preceding gene: 147675100
Following gene: 147673080
Centisome position: 20.79
GC content: 50.65
Gene sequence:
>1236_bases GTGTTTATGTTGTCCCAACTGAATGCCCATGTTCGTCAGTACATGCTCGTGACGTTCAACTACTGGAATTTTACTCTGAC TGATGGGGCGCTGCGTATGTTGGTAGTGCTCTATTTCTATGATTTAGGCTATTCCAGCTTAGCTATTGCCTCGCTATTTC TGTTCTATGAATTTTTTGGTGTCGTGACCAACTTAATTGGCGGGTGGCTTGGGGCTCGGCTTGGGCTGAATCGCACCATG AACATCGGGCTTGGCTTGCAAATCATCGCACTTTTGATGCTGGCAGTGCCAGCAAGCTGGCTGACCATTCCTTGGGTAAT GGCCGCGCAAGCCCTGTCGGGCATCGCGAAAGATCTCAATAAGATGAGTGCCAAAAGCGCCATCAAAACCCTAGTGCCAG AAAATGCACAAGGCGCGTTGTTTAAGTGGATTGCGATCCTGACGGGGTCAAAGAATGCCTTAAAAGGTGCTGGATTTTTC TTGGGCGGAGCGTTGTTGTCTTTGATCGGTTTCCAGTACGCAGTGGCTGCCATGGCGGCTGTGTTGGTATTGGTTTTCAT TGGCAGCGTAATGAGTTTGAAATCCGATCTCGGCAAGGCCAAGAACAAGCCGAAGTTTTCCGATATTTTCTCTAAATCGG CGAGTGTGAACATCCTGTCGGCGGCACGGCTATTTCTGTTTGGCGCGCGCGATGTGTGGTTTGTCATCGCACTGCCTATC TATTTAGGCAGCGTGTTTGGTTGGGATCACAGTGCTGTGGGCGGTTTTCTGGCGCTTTGGGTGATTGGCTACGGCGTCAT TCAAGGATTCGCGCCCAAAATCACAGGCAGCAAATCGGAGCATCCACCAGCAGGGCGAGCCGCTATTGGCTGGGCATTGG CACTGTCTTTGGTCACGGGGCTGATTGCTTACGGTGTGCAGATACAGTGGCACCCAGAAGTGGTGATCATCGGAGGACTC ATGCTGTTTGGTGCGGTATTTGCGGTGAACTCTTCACTGCATTCATACCTGATTGTCAGCTACGCCAAAGATGATGGCGT ATCGCTTGATGTCGGCTTCTACTACATGGCGAATGCGATGGGGCGCTTAATCAGCACGATATTATCCGGCTGGGTCTTCC AGCTTTGGGGGCTGGCAGCTTGTTTGTGGGTCTCTTTCGGATTTTTAGTGCTGACGACGCTGATCTCATTTTGGCTGCCG AATCGTGCGTATACGTCACAAGTGAATTTGAAATAA
Upstream 100 bases:
>100_bases GGCCGGGTGCATTTACCAAAGAAGTGCAAGTGCAGTACGTGCATCAAATCGTCAAACCATAACCCGATCAAGGGCCGCAT AAGCGGCTCTTTTTAAGAGA
Downstream 100 bases:
>100_bases TGAGCTTGGTCGATTTTTTGTAGTCGATATGTACCCCTAGTCAATAATTTACCAATCCGCTTTTACGGGAATGCACAGAT AATTATTTATTGGAAATGTT
Product: putative transporter
Products: NA
Alternate protein names: Facilitator Superfamily Protein; Facilitator Superfamily Permease; Facilitator Superfamily Multidrug-Efflux Transporter; Membrane Transporter; Facilitator Superfamily Transporter; Multidrug Efflux Transporter MFS Family; Multidrug-Efflux Transporter; Nonfunctional Facilitator Superfamily Protein; MFS Transporter; Transporter-Like Protein; Permease Of Facilitator Superfamily; Nitric Oxide Reductase Cytochrome B Subunit
Number of amino acids: Translated: 411; Mature: 411
Protein sequence:
>411_residues MFMLSQLNAHVRQYMLVTFNYWNFTLTDGALRMLVVLYFYDLGYSSLAIASLFLFYEFFGVVTNLIGGWLGARLGLNRTM NIGLGLQIIALLMLAVPASWLTIPWVMAAQALSGIAKDLNKMSAKSAIKTLVPENAQGALFKWIAILTGSKNALKGAGFF LGGALLSLIGFQYAVAAMAAVLVLVFIGSVMSLKSDLGKAKNKPKFSDIFSKSASVNILSAARLFLFGARDVWFVIALPI YLGSVFGWDHSAVGGFLALWVIGYGVIQGFAPKITGSKSEHPPAGRAAIGWALALSLVTGLIAYGVQIQWHPEVVIIGGL MLFGAVFAVNSSLHSYLIVSYAKDDGVSLDVGFYYMANAMGRLISTILSGWVFQLWGLAACLWVSFGFLVLTTLISFWLP NRAYTSQVNLK
Sequences:
>Translated_411_residues MFMLSQLNAHVRQYMLVTFNYWNFTLTDGALRMLVVLYFYDLGYSSLAIASLFLFYEFFGVVTNLIGGWLGARLGLNRTM NIGLGLQIIALLMLAVPASWLTIPWVMAAQALSGIAKDLNKMSAKSAIKTLVPENAQGALFKWIAILTGSKNALKGAGFF LGGALLSLIGFQYAVAAMAAVLVLVFIGSVMSLKSDLGKAKNKPKFSDIFSKSASVNILSAARLFLFGARDVWFVIALPI YLGSVFGWDHSAVGGFLALWVIGYGVIQGFAPKITGSKSEHPPAGRAAIGWALALSLVTGLIAYGVQIQWHPEVVIIGGL MLFGAVFAVNSSLHSYLIVSYAKDDGVSLDVGFYYMANAMGRLISTILSGWVFQLWGLAACLWVSFGFLVLTTLISFWLP NRAYTSQVNLK >Mature_411_residues MFMLSQLNAHVRQYMLVTFNYWNFTLTDGALRMLVVLYFYDLGYSSLAIASLFLFYEFFGVVTNLIGGWLGARLGLNRTM NIGLGLQIIALLMLAVPASWLTIPWVMAAQALSGIAKDLNKMSAKSAIKTLVPENAQGALFKWIAILTGSKNALKGAGFF LGGALLSLIGFQYAVAAMAAVLVLVFIGSVMSLKSDLGKAKNKPKFSDIFSKSASVNILSAARLFLFGARDVWFVIALPI YLGSVFGWDHSAVGGFLALWVIGYGVIQGFAPKITGSKSEHPPAGRAAIGWALALSLVTGLIAYGVQIQWHPEVVIIGGL MLFGAVFAVNSSLHSYLIVSYAKDDGVSLDVGFYYMANAMGRLISTILSGWVFQLWGLAACLWVSFGFLVLTTLISFWLP NRAYTSQVNLK
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44514; Mature: 44514
Theoretical pI: Translated: 10.08; Mature: 10.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFMLSQLNAHVRQYMLVTFNYWNFTLTDGALRMLVVLYFYDLGYSSLAIASLFLFYEFFG CCCHHHHHHHHHHHHHEEEECCEEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH VVTNLIGGWLGARLGLNRTMNIGLGLQIIALLMLAVPASWLTIPWVMAAQALSGIAKDLN HHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH KMSAKSAIKTLVPENAQGALFKWIAILTGSKNALKGAGFFLGGALLSLIGFQYAVAAMAA HHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLVLVFIGSVMSLKSDLGKAKNKPKFSDIFSKSASVNILSAARLFLFGARDVWFVIALPI HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHH YLGSVFGWDHSAVGGFLALWVIGYGVIQGFAPKITGSKSEHPPAGRAAIGWALALSLVTG HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH LIAYGVQIQWHPEVVIIGGLMLFGAVFAVNSSLHSYLIVSYAKDDGVSLDVGFYYMANAM HHHHCCEEEECCCEEEEHHHHHHHHHHHHHHHHHHEEEEEEECCCCCEEEHHHHHHHHHH GRLISTILSGWVFQLWGLAACLWVSFGFLVLTTLISFWLPNRAYTSQVNLK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure MFMLSQLNAHVRQYMLVTFNYWNFTLTDGALRMLVVLYFYDLGYSSLAIASLFLFYEFFG CCCHHHHHHHHHHHHHEEEECCEEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH VVTNLIGGWLGARLGLNRTMNIGLGLQIIALLMLAVPASWLTIPWVMAAQALSGIAKDLN HHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH KMSAKSAIKTLVPENAQGALFKWIAILTGSKNALKGAGFFLGGALLSLIGFQYAVAAMAA HHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLVLVFIGSVMSLKSDLGKAKNKPKFSDIFSKSASVNILSAARLFLFGARDVWFVIALPI HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHH YLGSVFGWDHSAVGGFLALWVIGYGVIQGFAPKITGSKSEHPPAGRAAIGWALALSLVTG HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH LIAYGVQIQWHPEVVIIGGLMLFGAVFAVNSSLHSYLIVSYAKDDGVSLDVGFYYMANAM HHHHCCEEEECCCEEEEHHHHHHHHHHHHHHHHHHEEEEEEECCCCCEEEHHHHHHHHHH GRLISTILSGWVFQLWGLAACLWVSFGFLVLTTLISFWLPNRAYTSQVNLK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA