BacMap

Definition	Vibrio cholerae O395 chromosome 2, complete sequence.
Accession	NC_009457
Length	3,024,069

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The map label for this gene is cbiO1 [H]

Identifier: 147675581

GI number: 147675581

Start: 663488

End: 664225

Strand: Direct

Name: cbiO1 [H]

Synonym: VC0395_A0621

Alternate gene names: 147675581

Gene position: 663488-664225 (Clockwise)

Preceding gene: 147674765

Following gene: 147673586

Centisome position: 21.94

GC content: 50.95

Gene sequence:

>738_bases
ATGATCCGTTTGCAAGATATTCAGGTGACGTTTAACCCTGGCACGATTCTGGAAAATCGCGCATTACGCGGCGTATCGCT
AGAGGTTCCGGAACACCAATTTTTAACCGTGATTGGCTCTAACGGGGCGGGGAAGTCGACGCTACTCGGTGCGGTCACTG
GTGAAACGCCTATCGTGGGCGGTCAGGTGTTAATTGATGAGATTGATGTAACCAAACAGAGTGTGGATCAGCGTGCGAAT
CTGTGTGCTCGCGTGTTTCAAGACCCATTAGCGGGAACCTGTGGAGCCCTGACCATCGAAGAGAATATGGCGCTCGCTTA
TATGCGCGGTAAAAAACGTGGTTGGAGCTTGGCGCTCTCAAACCAGCGCCGGAAGTTGTTCCAAGAACGGATCAGCATCC
TCGGTTTGGGGTTAGAAGATCGTCTCGGTGACAATATTGGTTTGCTCTCAGGTGGTCAGCGTCAGGCGGTGAGTTTGGTG
ATGGCGACACTGTCAGAAAGCAAGCTCTTGCTCTTAGATGAACACACGGCGGCACTCGATCCTCGTATGGCGGCATTCAT
TATCGATCTCACGAAAAAAATTGTTAAAGAGTTCAATTTAACCGTGATGATGGTGACCCACTCGATGAAAGATGCTCTGG
CTTGTGGTGATCGCACCGTCATGCTGCATCAAGGTCAGATTGTCTTGGATGTCACAGGGGAACAGCGCGCGAACATGGGC
GTTCCTGAGCTTTTCTAA

Upstream 100 bases:

>100_bases
TCATGCCGAAGATTAAAAGGAATTTAAAATCAAAAAAGCGTAACGCACCTGCTCAGAAGCCCGAAGTCTCTCAGCAGGGA
AGCGTGTCAGGAGATGCAGT

Downstream 100 bases:

>100_bases
AGTGCGTGGAGAAGAGTTGGCAGACGATAGTTTGCTACTGAGTTAAGTGCCTGTTTGAATAGAAAACGGTGAGGAAAAAG
AGACGGATGATGAACAAGCG

Product: ABC transporter, ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MIRLQDIQVTFNPGTILENRALRGVSLEVPEHQFLTVIGSNGAGKSTLLGAVTGETPIVGGQVLIDEIDVTKQSVDQRAN
LCARVFQDPLAGTCGALTIEENMALAYMRGKKRGWSLALSNQRRKLFQERISILGLGLEDRLGDNIGLLSGGQRQAVSLV
MATLSESKLLLLDEHTAALDPRMAAFIIDLTKKIVKEFNLTVMMVTHSMKDALACGDRTVMLHQGQIVLDVTGEQRANMG
VPELF

Sequences:

>Translated_245_residues
MIRLQDIQVTFNPGTILENRALRGVSLEVPEHQFLTVIGSNGAGKSTLLGAVTGETPIVGGQVLIDEIDVTKQSVDQRAN
LCARVFQDPLAGTCGALTIEENMALAYMRGKKRGWSLALSNQRRKLFQERISILGLGLEDRLGDNIGLLSGGQRQAVSLV
MATLSESKLLLLDEHTAALDPRMAAFIIDLTKKIVKEFNLTVMMVTHSMKDALACGDRTVMLHQGQIVLDVTGEQRANMG
VPELF
>Mature_245_residues
MIRLQDIQVTFNPGTILENRALRGVSLEVPEHQFLTVIGSNGAGKSTLLGAVTGETPIVGGQVLIDEIDVTKQSVDQRAN
LCARVFQDPLAGTCGALTIEENMALAYMRGKKRGWSLALSNQRRKLFQERISILGLGLEDRLGDNIGLLSGGQRQAVSLV
MATLSESKLLLLDEHTAALDPRMAAFIIDLTKKIVKEFNLTVMMVTHSMKDALACGDRTVMLHQGQIVLDVTGEQRANMG
VPELF

Specific function: Part of the ABC transporter complex CbiONQ involved in cobalt import. Responsible for energy coupling to the transport system [H]

COG id: COG1101

COG function: function code R; ABC-type uncharacterized transport system, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI116734710, Length=227, Percent_Identity=29.5154185022026, Blast_Score=84, Evalue=8e-17,
Organism=Homo sapiens, GI45446740, Length=214, Percent_Identity=30.3738317757009, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI47078218, Length=214, Percent_Identity=30.3738317757009, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI27262624, Length=237, Percent_Identity=30.8016877637131, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI27262626, Length=237, Percent_Identity=30.8016877637131, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI105990541, Length=204, Percent_Identity=29.9019607843137, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI21536376, Length=215, Percent_Identity=30.2325581395349, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI4505771, Length=190, Percent_Identity=31.0526315789474, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI9961252, Length=190, Percent_Identity=31.0526315789474, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI150417984, Length=223, Percent_Identity=28.2511210762332, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI21729873, Length=230, Percent_Identity=26.9565217391304, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI15149474, Length=230, Percent_Identity=26.9565217391304, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI31657092, Length=207, Percent_Identity=26.0869565217391, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI42741659, Length=174, Percent_Identity=31.6091954022989, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI89111135, Length=227, Percent_Identity=24.6696035242291, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI27881501, Length=206, Percent_Identity=26.2135922330097, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI30795238, Length=206, Percent_Identity=26.2135922330097, Blast_Score=65, Evalue=8e-11,
Organism=Escherichia coli, GI87081709, Length=233, Percent_Identity=30.4721030042918, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1787164, Length=221, Percent_Identity=32.1266968325792, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI87082268, Length=224, Percent_Identity=31.25, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1786398, Length=237, Percent_Identity=33.3333333333333, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1790544, Length=258, Percent_Identity=27.1317829457364, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787029, Length=232, Percent_Identity=28.8793103448276, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1786253, Length=232, Percent_Identity=29.7413793103448, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1786872, Length=195, Percent_Identity=33.8461538461538, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787712, Length=209, Percent_Identity=29.6650717703349, Blast_Score=80, Evalue=8e-17,
Organism=Escherichia coli, GI1787089, Length=219, Percent_Identity=31.5068493150685, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786345, Length=213, Percent_Identity=32.3943661971831, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788761, Length=228, Percent_Identity=28.5087719298246, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1787370, Length=200, Percent_Identity=30, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789032, Length=211, Percent_Identity=28.436018957346, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787758, Length=236, Percent_Identity=28.3898305084746, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI145693107, Length=229, Percent_Identity=28.82096069869, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1786803, Length=230, Percent_Identity=28.2608695652174, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1790190, Length=216, Percent_Identity=28.7037037037037, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1787547, Length=208, Percent_Identity=27.4038461538462, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1790162, Length=217, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1787143, Length=227, Percent_Identity=29.0748898678414, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787500, Length=228, Percent_Identity=28.0701754385965, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789864, Length=231, Percent_Identity=26.8398268398268, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87081791, Length=216, Percent_Identity=28.2407407407407, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI87082267, Length=226, Percent_Identity=25.6637168141593, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788225, Length=217, Percent_Identity=27.6497695852535, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI48994997, Length=232, Percent_Identity=24.5689655172414, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790467, Length=207, Percent_Identity=26.5700483091787, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1788506, Length=217, Percent_Identity=28.110599078341, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1786698, Length=214, Percent_Identity=28.5046728971963, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1787105, Length=247, Percent_Identity=26.7206477732794, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789672, Length=234, Percent_Identity=26.0683760683761, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787112, Length=235, Percent_Identity=28.0851063829787, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1786319, Length=242, Percent_Identity=27.6859504132231, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1786703, Length=212, Percent_Identity=33.4905660377358, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI48994943, Length=221, Percent_Identity=25.3393665158371, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1789963, Length=240, Percent_Identity=27.9166666666667, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1786654, Length=218, Percent_Identity=27.5229357798165, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI48994883, Length=235, Percent_Identity=25.531914893617, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87081834, Length=194, Percent_Identity=29.3814432989691, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1786563, Length=206, Percent_Identity=28.1553398058252, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789891, Length=222, Percent_Identity=29.7297297297297, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI48995001, Length=219, Percent_Identity=25.1141552511416, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI87081782, Length=226, Percent_Identity=27.4336283185841, Blast_Score=61, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17541710, Length=224, Percent_Identity=29.9107142857143, Blast_Score=77, Evalue=8e-15,
Organism=Caenorhabditis elegans, GI115534520, Length=210, Percent_Identity=27.1428571428571, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71983523, Length=218, Percent_Identity=28.4403669724771, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71983510, Length=218, Percent_Identity=28.4403669724771, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI71983516, Length=218, Percent_Identity=28.4403669724771, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17569081, Length=226, Percent_Identity=29.2035398230088, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI193209708, Length=231, Percent_Identity=26.8398268398268, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17565586, Length=214, Percent_Identity=28.0373831775701, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI212646699, Length=175, Percent_Identity=31.4285714285714, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17558664, Length=227, Percent_Identity=26.8722466960352, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71988343, Length=230, Percent_Identity=27.8260869565217, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193208177, Length=206, Percent_Identity=23.7864077669903, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI193211015, Length=163, Percent_Identity=33.7423312883436, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI193211017, Length=163, Percent_Identity=33.7423312883436, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI71996809, Length=163, Percent_Identity=33.7423312883436, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17510237, Length=209, Percent_Identity=27.2727272727273, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17567269, Length=163, Percent_Identity=33.1288343558282, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17567265, Length=233, Percent_Identity=26.6094420600858, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI115535101, Length=232, Percent_Identity=27.1551724137931, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI25146777, Length=224, Percent_Identity=29.4642857142857, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI193202349, Length=230, Percent_Identity=26.9565217391304, Blast_Score=64, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI115532730, Length=179, Percent_Identity=29.608938547486, Blast_Score=64, Evalue=6e-11,
Organism=Drosophila melanogaster, GI45552345, Length=229, Percent_Identity=31.0043668122271, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI45552335, Length=229, Percent_Identity=31.0043668122271, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI45552359, Length=229, Percent_Identity=31.0043668122271, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI45552347, Length=229, Percent_Identity=31.0043668122271, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI45550972, Length=229, Percent_Identity=31.0043668122271, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI45552341, Length=229, Percent_Identity=31.0043668122271, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI45552363, Length=229, Percent_Identity=31.0043668122271, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI45552355, Length=229, Percent_Identity=31.0043668122271, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI45552357, Length=229, Percent_Identity=31.0043668122271, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI45552361, Length=229, Percent_Identity=31.0043668122271, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI45552353, Length=229, Percent_Identity=31.0043668122271, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI45552349, Length=229, Percent_Identity=31.0043668122271, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI45552351, Length=229, Percent_Identity=31.0043668122271, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24583969, Length=229, Percent_Identity=31.0043668122271, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI45552339, Length=229, Percent_Identity=31.0043668122271, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI45552337, Length=229, Percent_Identity=31.0043668122271, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI45552343, Length=229, Percent_Identity=31.0043668122271, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI85726357, Length=173, Percent_Identity=31.7919075144509, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI17136662, Length=232, Percent_Identity=26.2931034482759, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI161077321, Length=227, Percent_Identity=26.8722466960352, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24659289, Length=217, Percent_Identity=29.4930875576037, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI28574259, Length=224, Percent_Identity=26.3392857142857, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24643674, Length=210, Percent_Identity=24.2857142857143, Blast_Score=64, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR015856
- InterPro:   IPR003593
- InterPro:   IPR022112 [H]

Pfam domain/function: PF00005 ABC_tran; PF12370 CoABC_C [H]

EC number: 3.6.3.30 [C]

Molecular weight: Translated: 26653; Mature: 26653

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRLQDIQVTFNPGTILENRALRGVSLEVPEHQFLTVIGSNGAGKSTLLGAVTGETPIVG
CEEEEEEEEEECCCCEECCCCCCCEEEECCCCEEEEEEECCCCCCCEEEEEECCCCCEEC
GQVLIDEIDVTKQSVDQRANLCARVFQDPLAGTCGALTIEENMALAYMRGKKRGWSLALS
CEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCEEEEEEECCCCCEEEEEC
NQRRKLFQERISILGLGLEDRLGDNIGLLSGGQRQAVSLVMATLSESKLLLLDEHTAALD
HHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHCC
PRMAAFIIDLTKKIVKEFNLTVMMVTHSMKDALACGDRTVMLHQGQIVLDVTGEQRANMG
CHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHCCCEEEEEECCEEEEEECCCCCCCCC
VPELF
CCCCC
>Mature Secondary Structure
MIRLQDIQVTFNPGTILENRALRGVSLEVPEHQFLTVIGSNGAGKSTLLGAVTGETPIVG
CEEEEEEEEEECCCCEECCCCCCCEEEECCCCEEEEEEECCCCCCCEEEEEECCCCCEEC
GQVLIDEIDVTKQSVDQRANLCARVFQDPLAGTCGALTIEENMALAYMRGKKRGWSLALS
CEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCEEEEEEECCCCCEEEEEC
NQRRKLFQERISILGLGLEDRLGDNIGLLSGGQRQAVSLVMATLSESKLLLLDEHTAALD
HHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCHHCC
PRMAAFIIDLTKKIVKEFNLTVMMVTHSMKDALACGDRTVMLHQGQIVLDVTGEQRANMG
CHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHCCCEEEEEECCEEEEEECCCCCCCCC
VPELF
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11466286 [H]