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The map label for this gene is ylbK [H]

Identifier: 147675227

GI number: 147675227

Start: 122117

End: 124411

Strand: Direct

Name: ylbK [H]

Synonym: VC0395_A0132

Alternate gene names: 147675227

Gene position: 122117-124411 (Clockwise)

Preceding gene: 147674464

Following gene: 147673282

Centisome position: 4.04

GC content: 49.8

Gene sequence:

>2295_bases
GTGATGAAATGGGCGGTATCATTCAGCGTAGTCGTAGGGATAGTGTTTGCCCCATTGGCCTTGGCACAAGAAGCTCAAGC
TCAAGTCGCCAAACGACCTAAAATCGCGTTAGTTCTGGCGGGGGGCGGTGCCAAAGGCGCCGCGCACATGGGGGTTTTGC
GAGCCTTGGAAGAGATGCACGTCCCCGTCGATATCATCACAGGTACCAGTATGGGTGCTTATGTGGGTGGGTTATACGCA
ACAGGAATGAGCGCAGAGGAGATTGAAGCGCTGATTTATAGCGTGGATTGGAACCGAGGCTATCGAGATCGTGTCGATCG
TAGCCAGCGCCGAGTTCGTGACAAAGAGTATGAAGATCGCTACCAAATCACCACAGATCTTGGCCTACACTGGGGGGAAG
TGCGCGCGCCAAAAGGCGTAGTGCAAGGACAAAACATGCTGCGCATGTTGCGTGAAACCACAGGCAATCTTCCCGCCTTC
GATTCTTTTGATCAATTGGTGATCCCGTATCGCGCGGTAGCGACCGACATTATTCACCTTCAAGAAGTCGTGCTTGATAA
AGGCTTTTTGGTGGATGCCATGATGGCCAGCATGTCAGTACCCGGCGCGTTGCCACCTTATGAAATTGATGGGTTATGGC
TGGTGGATGGTGGTGTCACCAATAACATGCCCGTTGAGGTCGCGCGTGCGATGGGGGCCGATATTATCATCGCGGTCGAC
ATCAGCACCGACTACAAAAGCCAAGAGGACTTCACCAATCTCTTTACGGTTGCAGACCAGCTTTCGAACTATTTGGTTCG
CCGCAGCACGGAAAGACAGAGCGATCATTTGACCTCGCGCGATCTGCTGCTGCGTCCACCCGTGGGCAAAATGGAGACCA
TGGAGTTCGACAAAATGCCGGCGGCGTTTGCGATGGGCTACCAAGAAGCGATGGATAATCAGGCTTTTTTCAAGAACATT
GCTCTGAGTTCAGCGCAATATCAAGTGTATGTGGATGAGAAAGAAGAGCGGCGTAAAACCTTGCGCTATGGTGATAATGT
TCAGGTGGACGAAATTGTTCTGCAAAACAACACCCACTACAGCGATCTGCTATTACTGAACCGACTCAATTTAGAACCCG
CGCAAAAGCTCAGCACCGAAGAGATTGAAGCCAGCATAGAAGATCTCTATGCCCTAGATCGCTTCGAATTGGTGCGTTAT
CAATACGAACAACGCGATGACCAACAACAACTGGTGGTCGATGTGCGTGAAAAGTCTTGGGGGCCCAATTACGTCAATTT
CCGCTTCTTTTTAGAAGATGATTTTGATACGGAAAGTCAGTATGCCCTTGGCGTTTCCACCAATTTTACAGACATCAACT
CACACGGTGCTGAGCTGGCTCTGAATATGGATATGGGGACCGACAAGCTGATCGAAGCTGAGCTTTATTCGCCACTGTTA
TCGGGACAAAAAACATTTACGACGGCACTGCTGCATTTCAGTAACGAGCGGCGAAATGCGCCTTTGGCAGGCTTTGATGA
CACCTCTCTCGCGGCTACGGAGAATTACTTACCCGTCACTTATTCCGAATGGGTTGCCGAACTGGCGCTCGGCTATCAAA
TCGAGTTATGGCGAGAAATGAAACTCGGTGCACGCTACAGCAAAGGCAATGGCGAAGCTTCTTCATTACCGGTTTTTGGG
GATTTTTCCTTCCAGCGTCGCGGGGTGTTTTTTGATTATCGACACGACACCTTGGATGACTTTAGCTTACCTCAGCAAGG
CATCTATTTTGACTTGGAATATCTGATCTCTAAAGACAGTTTTGACGGTAGCAATCCCCTTTCTGGAGATGCCCTCTCTT
CCGATACCGTATCGGAGCTGTCTGGGCGATTGATCGCTGCGCACACCTTTTCACGCCATACTTTAGTCGCAAACTTGGAT
ATGGGGGTGGTGAAAAGTAAACACTCATCTACCCCGATTGATCCGAAAAGCATCGGTGGTTTTCTCAACTTGTCGGGCAT
CCCCCGCAATAGCTTGATTGGTCAAAACAAGCTGTATGGAAACCTCGTTTACCGTTACCGCTGGTTTGATAATGACTTTG
GTATGTTCACGTCCCCCGTCTACTTAGGGGCATCGATTGAATACGGTGGCGTCTGGTCTGATCCCGATTTGCGTTTGCAA
GATGCGCCTTTGTATGGCGCAGGTTCGATCTTCGCTGGGGTCAATTCGCCGATTGGGCCGATTATGTTTGGCTATGGTCG
CACCGAGCAGAATTATGACTCGATCTATTTCATTATTGGTACCACATTTAAATAG

Upstream 100 bases:

>100_bases
GTCTATGCGCTTTGGATGTGCTCACTTGCCGTCTGCCTGTAACTCCCCATAGTTTGGGTATATATTGGTCTGATTCTTAA
GGATTTCGAGGATAACTCAC

Downstream 100 bases:

>100_bases
CGAGAGCTTGAGATGGGTGGGGTTTGCGCGCTTTTCACTCAGTGAGAAAGCTAAAACTTTAGTCTCAAGTTGCTATGTTG
GTCAAAATGATGAGATTTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 764; Mature: 764

Protein sequence:

>764_residues
MMKWAVSFSVVVGIVFAPLALAQEAQAQVAKRPKIALVLAGGGAKGAAHMGVLRALEEMHVPVDIITGTSMGAYVGGLYA
TGMSAEEIEALIYSVDWNRGYRDRVDRSQRRVRDKEYEDRYQITTDLGLHWGEVRAPKGVVQGQNMLRMLRETTGNLPAF
DSFDQLVIPYRAVATDIIHLQEVVLDKGFLVDAMMASMSVPGALPPYEIDGLWLVDGGVTNNMPVEVARAMGADIIIAVD
ISTDYKSQEDFTNLFTVADQLSNYLVRRSTERQSDHLTSRDLLLRPPVGKMETMEFDKMPAAFAMGYQEAMDNQAFFKNI
ALSSAQYQVYVDEKEERRKTLRYGDNVQVDEIVLQNNTHYSDLLLLNRLNLEPAQKLSTEEIEASIEDLYALDRFELVRY
QYEQRDDQQQLVVDVREKSWGPNYVNFRFFLEDDFDTESQYALGVSTNFTDINSHGAELALNMDMGTDKLIEAELYSPLL
SGQKTFTTALLHFSNERRNAPLAGFDDTSLAATENYLPVTYSEWVAELALGYQIELWREMKLGARYSKGNGEASSLPVFG
DFSFQRRGVFFDYRHDTLDDFSLPQQGIYFDLEYLISKDSFDGSNPLSGDALSSDTVSELSGRLIAAHTFSRHTLVANLD
MGVVKSKHSSTPIDPKSIGGFLNLSGIPRNSLIGQNKLYGNLVYRYRWFDNDFGMFTSPVYLGASIEYGGVWSDPDLRLQ
DAPLYGAGSIFAGVNSPIGPIMFGYGRTEQNYDSIYFIIGTTFK

Sequences:

>Translated_764_residues
MMKWAVSFSVVVGIVFAPLALAQEAQAQVAKRPKIALVLAGGGAKGAAHMGVLRALEEMHVPVDIITGTSMGAYVGGLYA
TGMSAEEIEALIYSVDWNRGYRDRVDRSQRRVRDKEYEDRYQITTDLGLHWGEVRAPKGVVQGQNMLRMLRETTGNLPAF
DSFDQLVIPYRAVATDIIHLQEVVLDKGFLVDAMMASMSVPGALPPYEIDGLWLVDGGVTNNMPVEVARAMGADIIIAVD
ISTDYKSQEDFTNLFTVADQLSNYLVRRSTERQSDHLTSRDLLLRPPVGKMETMEFDKMPAAFAMGYQEAMDNQAFFKNI
ALSSAQYQVYVDEKEERRKTLRYGDNVQVDEIVLQNNTHYSDLLLLNRLNLEPAQKLSTEEIEASIEDLYALDRFELVRY
QYEQRDDQQQLVVDVREKSWGPNYVNFRFFLEDDFDTESQYALGVSTNFTDINSHGAELALNMDMGTDKLIEAELYSPLL
SGQKTFTTALLHFSNERRNAPLAGFDDTSLAATENYLPVTYSEWVAELALGYQIELWREMKLGARYSKGNGEASSLPVFG
DFSFQRRGVFFDYRHDTLDDFSLPQQGIYFDLEYLISKDSFDGSNPLSGDALSSDTVSELSGRLIAAHTFSRHTLVANLD
MGVVKSKHSSTPIDPKSIGGFLNLSGIPRNSLIGQNKLYGNLVYRYRWFDNDFGMFTSPVYLGASIEYGGVWSDPDLRLQ
DAPLYGAGSIFAGVNSPIGPIMFGYGRTEQNYDSIYFIIGTTFK
>Mature_764_residues
MMKWAVSFSVVVGIVFAPLALAQEAQAQVAKRPKIALVLAGGGAKGAAHMGVLRALEEMHVPVDIITGTSMGAYVGGLYA
TGMSAEEIEALIYSVDWNRGYRDRVDRSQRRVRDKEYEDRYQITTDLGLHWGEVRAPKGVVQGQNMLRMLRETTGNLPAF
DSFDQLVIPYRAVATDIIHLQEVVLDKGFLVDAMMASMSVPGALPPYEIDGLWLVDGGVTNNMPVEVARAMGADIIIAVD
ISTDYKSQEDFTNLFTVADQLSNYLVRRSTERQSDHLTSRDLLLRPPVGKMETMEFDKMPAAFAMGYQEAMDNQAFFKNI
ALSSAQYQVYVDEKEERRKTLRYGDNVQVDEIVLQNNTHYSDLLLLNRLNLEPAQKLSTEEIEASIEDLYALDRFELVRY
QYEQRDDQQQLVVDVREKSWGPNYVNFRFFLEDDFDTESQYALGVSTNFTDINSHGAELALNMDMGTDKLIEAELYSPLL
SGQKTFTTALLHFSNERRNAPLAGFDDTSLAATENYLPVTYSEWVAELALGYQIELWREMKLGARYSKGNGEASSLPVFG
DFSFQRRGVFFDYRHDTLDDFSLPQQGIYFDLEYLISKDSFDGSNPLSGDALSSDTVSELSGRLIAAHTFSRHTLVANLD
MGVVKSKHSSTPIDPKSIGGFLNLSGIPRNSLIGQNKLYGNLVYRYRWFDNDFGMFTSPVYLGASIEYGGVWSDPDLRLQ
DAPLYGAGSIFAGVNSPIGPIMFGYGRTEQNYDSIYFIIGTTFK

Specific function: Unknown

COG id: COG0729

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656039, Length=303, Percent_Identity=31.6831683168317, Blast_Score=123, Evalue=5e-28,
Organism=Homo sapiens, GI260656037, Length=303, Percent_Identity=31.6831683168317, Blast_Score=123, Evalue=5e-28,
Organism=Homo sapiens, GI260656043, Length=303, Percent_Identity=31.6831683168317, Blast_Score=123, Evalue=5e-28,
Organism=Homo sapiens, GI260656041, Length=303, Percent_Identity=31.6831683168317, Blast_Score=123, Evalue=5e-28,
Organism=Homo sapiens, GI116256487, Length=303, Percent_Identity=31.6831683168317, Blast_Score=123, Evalue=5e-28,
Organism=Homo sapiens, GI148727335, Length=306, Percent_Identity=32.0261437908497, Blast_Score=118, Evalue=2e-26,
Organism=Homo sapiens, GI148727290, Length=306, Percent_Identity=32.0261437908497, Blast_Score=118, Evalue=2e-26,
Organism=Escherichia coli, GI226510936, Length=314, Percent_Identity=26.7515923566879, Blast_Score=103, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI71997299, Length=321, Percent_Identity=26.791277258567, Blast_Score=79, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71997289, Length=291, Percent_Identity=27.8350515463918, Blast_Score=79, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6323581, Length=304, Percent_Identity=26.6447368421053, Blast_Score=104, Evalue=6e-23,
Organism=Drosophila melanogaster, GI281376913, Length=299, Percent_Identity=28.7625418060201, Blast_Score=92, Evalue=1e-18,
Organism=Drosophila melanogaster, GI28571388, Length=299, Percent_Identity=28.4280936454849, Blast_Score=90, Evalue=7e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 85617; Mature: 85617

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKWAVSFSVVVGIVFAPLALAQEAQAQVAKRPKIALVLAGGGAKGAAHMGVLRALEEMH
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHC
VPVDIITGTSMGAYVGGLYATGMSAEEIEALIYSVDWNRGYRDRVDRSQRRVRDKEYEDR
CCEEEEECCCHHHHHHHHHHCCCCHHHHEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCC
YQITTDLGLHWGEVRAPKGVVQGQNMLRMLRETTGNLPAFDSFDQLVIPYRAVATDIIHL
EEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
QEVVLDKGFLVDAMMASMSVPGALPPYEIDGLWLVDGGVTNNMPVEVARAMGADIIIAVD
HHHHHCCCHHHHHHHHHHCCCCCCCCEECCEEEEECCCCCCCCHHHHHHHCCCCEEEEEE
ISTDYKSQEDFTNLFTVADQLSNYLVRRSTERQSDHLTSRDLLLRPPVGKMETMEFDKMP
ECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCEEECCCCCCCCCCHHHCCC
AAFAMGYQEAMDNQAFFKNIALSSAQYQVYVDEKEERRKTLRYGDNVQVDEIVLQNNTHY
HHHHHHHHHHHCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEEEEEECCCCH
SDLLLLNRLNLEPAQKLSTEEIEASIEDLYALDRFELVRYQYEQRDDQQQLVVDVREKSW
HHHHEEECCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
GPNYVNFRFFLEDDFDTESQYALGVSTNFTDINSHGAELALNMDMGTDKLIEAELYSPLL
CCCEEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHH
SGQKTFTTALLHFSNERRNAPLAGFDDTSLAATENYLPVTYSEWVAELALGYQIELWREM
CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHCCCEEEEHHHH
KLGARYSKGNGEASSLPVFGDFSFQRRGVFFDYRHDTLDDFSLPQQGIYFDLEYLISKDS
HCCCEECCCCCCCCCCCEEECCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEEEECCC
FDGSNPLSGDALSSDTVSELSGRLIAAHTFSRHTLVANLDMGVVKSKHSSTPIDPKSIGG
CCCCCCCCCCCCCCCHHHHHCCCEEEEEECCCEEEEEECCHHHEECCCCCCCCCHHHCCC
FLNLSGIPRNSLIGQNKLYGNLVYRYRWFDNDFGMFTSPVYLGASIEYGGVWSDPDLRLQ
EEEECCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCEEEECEEEECCEECCCCCEEE
DAPLYGAGSIFAGVNSPIGPIMFGYGRTEQNYDSIYFIIGTTFK
CCCCCCCCCEEECCCCCCCCEEECCCCCCCCCCEEEEEEEECCC
>Mature Secondary Structure
MMKWAVSFSVVVGIVFAPLALAQEAQAQVAKRPKIALVLAGGGAKGAAHMGVLRALEEMH
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHC
VPVDIITGTSMGAYVGGLYATGMSAEEIEALIYSVDWNRGYRDRVDRSQRRVRDKEYEDR
CCEEEEECCCHHHHHHHHHHCCCCHHHHEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCC
YQITTDLGLHWGEVRAPKGVVQGQNMLRMLRETTGNLPAFDSFDQLVIPYRAVATDIIHL
EEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHH
QEVVLDKGFLVDAMMASMSVPGALPPYEIDGLWLVDGGVTNNMPVEVARAMGADIIIAVD
HHHHHCCCHHHHHHHHHHCCCCCCCCEECCEEEEECCCCCCCCHHHHHHHCCCCEEEEEE
ISTDYKSQEDFTNLFTVADQLSNYLVRRSTERQSDHLTSRDLLLRPPVGKMETMEFDKMP
ECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCEEECCCCCCCCCCHHHCCC
AAFAMGYQEAMDNQAFFKNIALSSAQYQVYVDEKEERRKTLRYGDNVQVDEIVLQNNTHY
HHHHHHHHHHHCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEEEEEECCCCH
SDLLLLNRLNLEPAQKLSTEEIEASIEDLYALDRFELVRYQYEQRDDQQQLVVDVREKSW
HHHHEEECCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
GPNYVNFRFFLEDDFDTESQYALGVSTNFTDINSHGAELALNMDMGTDKLIEAELYSPLL
CCCEEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHH
SGQKTFTTALLHFSNERRNAPLAGFDDTSLAATENYLPVTYSEWVAELALGYQIELWREM
CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHCCCEEEEHHHH
KLGARYSKGNGEASSLPVFGDFSFQRRGVFFDYRHDTLDDFSLPQQGIYFDLEYLISKDS
HCCCEECCCCCCCCCCCEEECCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEEEECCC
FDGSNPLSGDALSSDTVSELSGRLIAAHTFSRHTLVANLDMGVVKSKHSSTPIDPKSIGG
CCCCCCCCCCCCCCCHHHHHCCCEEEEEECCCEEEEEECCHHHEECCCCCCCCCHHHCCC
FLNLSGIPRNSLIGQNKLYGNLVYRYRWFDNDFGMFTSPVYLGASIEYGGVWSDPDLRLQ
EEEECCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCEEEECEEEECCEECCCCCEEE
DAPLYGAGSIFAGVNSPIGPIMFGYGRTEQNYDSIYFIIGTTFK
CCCCCCCCCEEECCCCCCCCEEECCCCCCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]