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The map label for this gene is ybaO [H]

Identifier: 147675157

GI number: 147675157

Start: 620735

End: 621271

Strand: Direct

Name: ybaO [H]

Synonym: VC0395_A0580

Alternate gene names: 147675157

Gene position: 620735-621271 (Clockwise)

Preceding gene: 229259766

Following gene: 147674297

Centisome position: 20.53

GC content: 44.51

Gene sequence:

>537_bases
TTGGAGAGAAAAACTTTGCCATTTTGCCTATGCTTTTGTAGTTTTGTAGAAAAATTTTCTCTAAAAAAGGCAATTTGTAT
GTTGCTCGACAAAGTTGATCGGCAAATCTTGGCCATTTTGCAACAAGACTGCACCGTGTCACTCAATGAATTAGCCGAAG
CGGTCAATTTAACCACAACGCCTTGCTGGAAGCGTTTGAAAAAAATGGAAGAAGGTGGCGTGATTCGCGAGCGAGTCGCA
CTGCTTGATGCGCAAGCCCTTGACCTCTCTTTCACGGCCTTTGTCATGGTGACGACCAATAACCACTCCCATGAATGGTA
CTGCCGCTTTGTGACTGCCGTGGAAGAGTTTCCCGAAGTGATGGAGTTTTATCGCATGGCGGGAGAATACGATTACATGA
TGAAGGTGCAGGTCAAAGATATGCCGTGTTTTGACCGATTCTATAAAAAACTGGTCAATAGTATCGAAGGGTTGAACAAA
GTGACCTCCACCTTTGCGATGGAGTCACTTAAATACACGACTCAGTTACCGCTCTAA

Upstream 100 bases:

>100_bases
ATAGTCTGCTTCAATTTTACGAATTGCACTGTTAATCCACTGATGGTCGGTACACATAATCCAGTTTCTCCCTTAGGTTA
CCGAATCAGTTTAGCTAGGC

Downstream 100 bases:

>100_bases
GGGTGAGATCAGCTTAAAAAGCGCATAACGCCTTCTTGGACGGCTGTTGCGACCAAATTGCCTTGGCGATCATAAATCTC
ACCACGCACTAAACCACGTG

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MERKTLPFCLCFCSFVEKFSLKKAICMLLDKVDRQILAILQQDCTVSLNELAEAVNLTTTPCWKRLKKMEEGGVIRERVA
LLDAQALDLSFTAFVMVTTNNHSHEWYCRFVTAVEEFPEVMEFYRMAGEYDYMMKVQVKDMPCFDRFYKKLVNSIEGLNK
VTSTFAMESLKYTTQLPL

Sequences:

>Translated_178_residues
MERKTLPFCLCFCSFVEKFSLKKAICMLLDKVDRQILAILQQDCTVSLNELAEAVNLTTTPCWKRLKKMEEGGVIRERVA
LLDAQALDLSFTAFVMVTTNNHSHEWYCRFVTAVEEFPEVMEFYRMAGEYDYMMKVQVKDMPCFDRFYKKLVNSIEGLNK
VTSTFAMESLKYTTQLPL
>Mature_178_residues
MERKTLPFCLCFCSFVEKFSLKKAICMLLDKVDRQILAILQQDCTVSLNELAEAVNLTTTPCWKRLKKMEEGGVIRERVA
LLDAQALDLSFTAFVMVTTNNHSHEWYCRFVTAVEEFPEVMEFYRMAGEYDYMMKVQVKDMPCFDRFYKKLVNSIEGLNK
VTSTFAMESLKYTTQLPL

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=151, Percent_Identity=64.9006622516556, Blast_Score=223, Evalue=6e-60,
Organism=Escherichia coli, GI1787116, Length=155, Percent_Identity=33.5483870967742, Blast_Score=104, Evalue=4e-24,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 20725; Mature: 20725

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.5 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
10.1 %Cys+Met (Translated Protein)
4.5 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
10.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERKTLPFCLCFCSFVEKFSLKKAICMLLDKVDRQILAILQQDCTVSLNELAEAVNLTTT
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC
PCWKRLKKMEEGGVIRERVALLDAQALDLSFTAFVMVTTNNHSHEWYCRFVTAVEEFPEV
HHHHHHHHHHHCCHHHHHHHHHHHHHHCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHH
MEFYRMAGEYDYMMKVQVKDMPCFDRFYKKLVNSIEGLNKVTSTFAMESLKYTTQLPL
HHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MERKTLPFCLCFCSFVEKFSLKKAICMLLDKVDRQILAILQQDCTVSLNELAEAVNLTTT
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC
PCWKRLKKMEEGGVIRERVALLDAQALDLSFTAFVMVTTNNHSHEWYCRFVTAVEEFPEV
HHHHHHHHHHHCCHHHHHHHHHHHHHHCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHH
MEFYRMAGEYDYMMKVQVKDMPCFDRFYKKLVNSIEGLNKVTSTFAMESLKYTTQLPL
HHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]