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The map label for this gene is fliN [H]

Identifier: 147674715

GI number: 147674715

Start: 1831678

End: 1832094

Strand: Reverse

Name: fliN [H]

Synonym: VC0395_A1708

Alternate gene names: 147674715

Gene position: 1832094-1831678 (Counterclockwise)

Preceding gene: 147675314

Following gene: 147675753

Centisome position: 60.58

GC content: 50.36

Gene sequence:

>417_bases
TTGAAGATGGCAAAAAGCGAAGATGAAAGACTGGCCGAAGAATGGGCTGCCGCACTGGGGGAAGACCCTAATGCGCCTGA
TATTGATGTGGATGAAATCTTAGCCGCACCACTTGAAGAGCTGAAAAACACGGCGCCCCCAATTACGGATGACGAGCGCC
GTAAGCTCGATACCATTATGGATATTCCGGTGACCATCTCGATGGAAGTCGGGCGCTCTAAAATCAGCATTCGTAACCTG
CTGCAATTGAACCAAGGTTCGGTGGTGGAGTTGGATCGGATTGCCGATGAGTCACTCGATGTGATGGTTAACGGCACGCT
GATTGCGCATGGCGAAGTGGTGGTGGTGAACGATAAGTTTGGTATCCGCCTCACCGACGTGATAAGTCAAACCGAACGTA
TCAAGAAATTGAGATAG

Upstream 100 bases:

>100_bases
GAGTTTGAAAACGCAGAAGAAGATGAAATCGAATAATCCGTTTTACGACGTCGGGATGATCGCTCGATAGCGGCGGATAA
TGAAAAGAACCAATAGGTAG

Downstream 100 bases:

>100_bases
CCAATGCGAAAATTGGCGGCTCTGTTTCTCATCCCTGTCCCCGGGTTGGCTGCTACCAGCAGCCAACTGGATTTAGCGAC
CACCTTGGGGTCGCTTTTGT

Product: flagellar motor switch protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MKMAKSEDERLAEEWAAALGEDPNAPDIDVDEILAAPLEELKNTAPPITDDERRKLDTIMDIPVTISMEVGRSKISIRNL
LQLNQGSVVELDRIADESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKLR

Sequences:

>Translated_138_residues
MKMAKSEDERLAEEWAAALGEDPNAPDIDVDEILAAPLEELKNTAPPITDDERRKLDTIMDIPVTISMEVGRSKISIRNL
LQLNQGSVVELDRIADESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKLR
>Mature_138_residues
MKMAKSEDERLAEEWAAALGEDPNAPDIDVDEILAAPLEELKNTAPPITDDERRKLDTIMDIPVTISMEVGRSKISIRNL
LQLNQGSVVELDRIADESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKLR

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Bacterial flagellum basal body (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=82, Percent_Identity=56.0975609756098, Blast_Score=103, Evalue=4e-24,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 15333; Mature: 15333

Theoretical pI: Translated: 4.27; Mature: 4.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMAKSEDERLAEEWAAALGEDPNAPDIDVDEILAAPLEELKNTAPPITDDERRKLDTIM
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
DIPVTISMEVGRSKISIRNLLQLNQGSVVELDRIADESLDVMVNGTLIAHGEVVVVNDKF
CCCEEEEECCCCCHHHHHHHHHCCCCCEEEHHHHCCCCCEEEECCEEEECCEEEEEECCC
GIRLTDVISQTERIKKLR
CEEHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKMAKSEDERLAEEWAAALGEDPNAPDIDVDEILAAPLEELKNTAPPITDDERRKLDTIM
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
DIPVTISMEVGRSKISIRNLLQLNQGSVVELDRIADESLDVMVNGTLIAHGEVVVVNDKF
CCCEEEEECCCCCHHHHHHHHHCCCCCEEEHHHHCCCCCEEEECCEEEECCEEEEEECCC
GIRLTDVISQTERIKKLR
CEEHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7622217; 10984043 [H]