Click here to switch to the map view.

The map label for this gene is exbD2

Identifier: 147674469

GI number: 147674469

Start: 1211555

End: 1211959

Strand: Reverse

Name: exbD2

Synonym: VC0395_A1151

Alternate gene names: 147674469

Gene position: 1211959-1211555 (Counterclockwise)

Preceding gene: 147675745

Following gene: 147675420

Centisome position: 40.08

GC content: 50.37

Gene sequence:

>405_bases
ATGAGGCTAGGGCGCAGAACGTCAAAGCAAGAAGAAGCGCAGATCGATCTGACTTCGATGCTCGACATCGTCTTTATCAT
GTTAATTTTCTTCATTGTGACCAGCTCGTTTGTGCGCGAATCGGGTGTGGAAGTCAATCGCCCGACAGCGGCGCATGCCG
TAAGCCAAAAACAGGCTGGGATTTTTGTGGCGATTACCGCGGCCAACGACATCTACATTGATAAACGTCAGGTAGACGTG
GAGCGAGTGCAAGCGACTTTAGAGCATCTGTTGTTAGACCAACCGGATGCTTCCTTAGTGATTCAAGCTGATGAGCATGC
CTTTAACGGCACCGTGGTCAAAGTGATGGATGCGGCGAAAGGCGCTGGAGTAAAAAGCATTGCATTAGCGGCGGAGAAAC
CCTAA

Upstream 100 bases:

>100_bases
GCATGGTGGCCGCATTAGCGGGACTCTTCGTCCACGCACGTTTGAGCAAAACCTGTCGTGGACTTGAAATGAAATTAGAA
CAAGCGTTAAGGAGCCAATC

Downstream 100 bases:

>100_bases
TGGGACGCTTGATCTTAGCCAGCCCGATTGCGTTGTTAGTGACACTGGCGCTGTTTAGCTTGATGGCTTGGATGGTGGAT
AACGGCGGAAAGAGCATTCC

Product: TonB system transport protein ExbD2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MRLGRRTSKQEEAQIDLTSMLDIVFIMLIFFIVTSSFVRESGVEVNRPTAAHAVSQKQAGIFVAITAANDIYIDKRQVDV
ERVQATLEHLLLDQPDASLVIQADEHAFNGTVVKVMDAAKGAGVKSIALAAEKP

Sequences:

>Translated_134_residues
MRLGRRTSKQEEAQIDLTSMLDIVFIMLIFFIVTSSFVRESGVEVNRPTAAHAVSQKQAGIFVAITAANDIYIDKRQVDV
ERVQATLEHLLLDQPDASLVIQADEHAFNGTVVKVMDAAKGAGVKSIALAAEKP
>Mature_134_residues
MRLGRRTSKQEEAQIDLTSMLDIVFIMLIFFIVTSSFVRESGVEVNRPTAAHAVSQKQAGIFVAITAANDIYIDKRQVDV
ERVQATLEHLLLDQPDASLVIQADEHAFNGTVVKVMDAAKGAGVKSIALAAEKP

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EXBD2_VIBCH (Q9ZHV9)

Other databases:

- EMBL:   AF047974
- EMBL:   AE003852
- PIR:   E82187
- RefSeq:   NP_231185.1
- ProteinModelPortal:   Q9ZHV9
- SMR:   Q9ZHV9
- GeneID:   2613924
- GenomeReviews:   AE003852_GR
- KEGG:   vch:VC1545
- TIGR:   VC_1545
- HOGENOM:   HBG729503
- OMA:   KGAGVKN
- ProtClustDB:   CLSK874423
- InterPro:   IPR003400

Pfam domain/function: PF02472 ExbD

EC number: NA

Molecular weight: Translated: 14608; Mature: 14608

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x18ebe37c)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLGRRTSKQEEAQIDLTSMLDIVFIMLIFFIVTSSFVRESGVEVNRPTAAHAVSQKQAG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCC
IFVAITAANDIYIDKRQVDVERVQATLEHLLLDQPDASLVIQADEHAFNGTVVKVMDAAK
EEEEEEECCEEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEEECCC
GAGVKSIALAAEKP
CCCCCEEEEECCCH
>Mature Secondary Structure
MRLGRRTSKQEEAQIDLTSMLDIVFIMLIFFIVTSSFVRESGVEVNRPTAAHAVSQKQAG
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCC
IFVAITAANDIYIDKRQVDVERVQATLEHLLLDQPDASLVIQADEHAFNGTVVKVMDAAK
EEEEEEECCEEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEEECCC
GAGVKSIALAAEKP
CCCCCEEEEECCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9781885; 10952301