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The map label for this gene is ydaM [H]

Identifier: 147674355

GI number: 147674355

Start: 817659

End: 818990

Strand: Direct

Name: ydaM [H]

Synonym: VC0395_A0806

Alternate gene names: 147674355

Gene position: 817659-818990 (Clockwise)

Preceding gene: 147675526

Following gene: 147674138

Centisome position: 27.04

GC content: 48.72

Gene sequence:

>1332_bases
GTGAAAGTGCTGCCAAGAGTGTTATTAGGATTAGTCGCGGTCACGATTGTGACCGTATTGCTGTACTGGCAGTTTGGTTC
TGCGAAACGAGTGTTGATTGAACCTCAACACTATGCCTATTTCACCACCAACGATCAAACCGCTGGCGGCACATCAACCA
GCGCCTTATCCCTCAATGGCAATACTGCCAAAGTGGACTGTGAATTGAATGCCAGTCGCTACGCGTGGCCATATTGTGGC
ATCTCTATTCACCTTAATCCCGACCCTCAACGTGGCCTCGATTTGAGTGATATCCATACCATACGTCTTAACGTGGACTT
GCAAGGCCCCGCTGCAGAGCCTGCGGCAATGCGTCTGTATTTACGTAATTTCAATCCGATCTACTCTCAGCTTGATGATG
AATATACTCATAAATACAACGGATTAGAGTTTGTGCCGGGCGTTGGGAAAGGTGTGATTGATATTCCCATTCGCAGCTTG
CAAGTAATGACGTGGTGGTTGGTTGATAATCGTATTGCCATTGAACACTCCGCTCCTGAGTTTTCCAACGTCAATAAAAT
TGAATTTGCGACCGGTTCAGCCAGTCCACTAGGGCAATATCAATTGACCGTGCATCAAGTGGAATTGATTGGGGATTATG
TGGCTGGAGAGAAGCTGTTTCTTGCCATGTTGATCATGTGGGCGGTGGCAGGAGCATGGCTCTCTGCGCTCGAAATTCGT
CGTAATCGTCGTGAGGTTTTACGTGCTCGTATGCGCCAAGAGCACTTACAGCGTTTGAATCACTCATTGCATGAGCAAAA
CATAAAGTTCGTCGAAATGGCGCATCGTGATGCATTGACGGGAGCCATTAATCGGCATGGCATTCGTGATTGGTTGCAAG
ATCAAGCGCGCTTAGTGCGCTGGCAACTCAATCACGTTAGCGTACTGTTCATCGATATTGATTACTTCAAACAAGTCAAC
GATGTGTACGGACACAGTCTAGGGGATGATCTGCTGCGTGAGTTTGCTTTGGTTATCAGCCGTGAAATCCGAGAAAGTGA
CAAATTAGTGCGTTGGGGTGGGGAAGAGTTTGTGGTGTTTTGCGCGCAGACAACCCTTGAGCAAGCGATTGAGCTTGCAG
AGCGGCTTAGAGCTAAAATCGCCGACCACAGTTGGATACACGGAGGCGCGATCACGTGCAGTCTCGGTATTGCCCAAATG
GGCGACGAGCGGATTACGGAAACCGTTTCACGCGCCGACGAAGCGTTATACCGAGCCAAACGGCTTGGCCGCAATCGAAT
CGAAGTTCACTATGGATTAATGGCCAAAAGCAGTGATGGAGAAAAAGGGTGA

Upstream 100 bases:

>100_bases
ACGCATCTAACCGCTATTTTTTGGAAGCAATCTCTCTTTATTGGGTGTCTTGTATTAAGAGAGAGCGTGTTAATGATGTG
GCTTGACGCTGGAGTAGGTT

Downstream 100 bases:

>100_bases
GGACGGCACCAAGTCGTGTCTATCTAGCCTAAATTCAATCACTAAGAATGTTGCCGCAGGGTACGCGACAACATTCAGGG
ATTAGCTTATCGAGACGGAT

Product: GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 443

Protein sequence:

>443_residues
MKVLPRVLLGLVAVTIVTVLLYWQFGSAKRVLIEPQHYAYFTTNDQTAGGTSTSALSLNGNTAKVDCELNASRYAWPYCG
ISIHLNPDPQRGLDLSDIHTIRLNVDLQGPAAEPAAMRLYLRNFNPIYSQLDDEYTHKYNGLEFVPGVGKGVIDIPIRSL
QVMTWWLVDNRIAIEHSAPEFSNVNKIEFATGSASPLGQYQLTVHQVELIGDYVAGEKLFLAMLIMWAVAGAWLSALEIR
RNRREVLRARMRQEHLQRLNHSLHEQNIKFVEMAHRDALTGAINRHGIRDWLQDQARLVRWQLNHVSVLFIDIDYFKQVN
DVYGHSLGDDLLREFALVISREIRESDKLVRWGGEEFVVFCAQTTLEQAIELAERLRAKIADHSWIHGGAITCSLGIAQM
GDERITETVSRADEALYRAKRLGRNRIEVHYGLMAKSSDGEKG

Sequences:

>Translated_443_residues
MKVLPRVLLGLVAVTIVTVLLYWQFGSAKRVLIEPQHYAYFTTNDQTAGGTSTSALSLNGNTAKVDCELNASRYAWPYCG
ISIHLNPDPQRGLDLSDIHTIRLNVDLQGPAAEPAAMRLYLRNFNPIYSQLDDEYTHKYNGLEFVPGVGKGVIDIPIRSL
QVMTWWLVDNRIAIEHSAPEFSNVNKIEFATGSASPLGQYQLTVHQVELIGDYVAGEKLFLAMLIMWAVAGAWLSALEIR
RNRREVLRARMRQEHLQRLNHSLHEQNIKFVEMAHRDALTGAINRHGIRDWLQDQARLVRWQLNHVSVLFIDIDYFKQVN
DVYGHSLGDDLLREFALVISREIRESDKLVRWGGEEFVVFCAQTTLEQAIELAERLRAKIADHSWIHGGAITCSLGIAQM
GDERITETVSRADEALYRAKRLGRNRIEVHYGLMAKSSDGEKG
>Mature_443_residues
MKVLPRVLLGLVAVTIVTVLLYWQFGSAKRVLIEPQHYAYFTTNDQTAGGTSTSALSLNGNTAKVDCELNASRYAWPYCG
ISIHLNPDPQRGLDLSDIHTIRLNVDLQGPAAEPAAMRLYLRNFNPIYSQLDDEYTHKYNGLEFVPGVGKGVIDIPIRSL
QVMTWWLVDNRIAIEHSAPEFSNVNKIEFATGSASPLGQYQLTVHQVELIGDYVAGEKLFLAMLIMWAVAGAWLSALEIR
RNRREVLRARMRQEHLQRLNHSLHEQNIKFVEMAHRDALTGAINRHGIRDWLQDQARLVRWQLNHVSVLFIDIDYFKQVN
DVYGHSLGDDLLREFALVISREIRESDKLVRWGGEEFVVFCAQTTLEQAIELAERLRAKIADHSWIHGGAITCSLGIAQM
GDERITETVSRADEALYRAKRLGRNRIEVHYGLMAKSSDGEKG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=161, Percent_Identity=40.9937888198758, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1787262, Length=164, Percent_Identity=35.9756097560976, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI145693134, Length=158, Percent_Identity=32.9113924050633, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI87082007, Length=158, Percent_Identity=36.0759493670886, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1786584, Length=171, Percent_Identity=32.7485380116959, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI1788381, Length=162, Percent_Identity=35.8024691358025, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1787802, Length=169, Percent_Identity=32.5443786982249, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787816, Length=179, Percent_Identity=31.2849162011173, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1787541, Length=162, Percent_Identity=35.1851851851852, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI87081974, Length=290, Percent_Identity=26.8965517241379, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788085, Length=167, Percent_Identity=29.940119760479, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787056, Length=119, Percent_Identity=31.0924369747899, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI87081977, Length=172, Percent_Identity=30.8139534883721, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 50184; Mature: 50184

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLPRVLLGLVAVTIVTVLLYWQFGSAKRVLIEPQHYAYFTTNDQTAGGTSTSALSLNG
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEECCCCCCCCCCCEEEEECC
NTAKVDCELNASRYAWPYCGISIHLNPDPQRGLDLSDIHTIRLNVDLQGPAAEPAAMRLY
CEEEEEEEECCCCEECCEEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHH
LRNFNPIYSQLDDEYTHKYNGLEFVPGVGKGVIDIPIRSLQVMTWWLVDNRIAIEHSAPE
HHCCCHHHHHCCHHHHHHCCCEEECCCCCCCEEECCCHHEEEEEEEEECCEEEEEECCCC
FSNVNKIEFATGSASPLGQYQLTVHQVELIGDYVAGEKLFLAMLIMWAVAGAWLSALEIR
CCCCCEEEEECCCCCCCCCEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
RNRREVLRARMRQEHLQRLNHSLHEQNIKFVEMAHRDALTGAINRHGIRDWLQDQARLVR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WQLNHVSVLFIDIDYFKQVNDVYGHSLGDDLLREFALVISREIRESDKLVRWGGEEFVVF
EEECCEEEEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCEEEEE
CAQTTLEQAIELAERLRAKIADHSWIHGGAITCSLGIAQMGDERITETVSRADEALYRAK
EHHHHHHHHHHHHHHHHHHHCCCCEECCCEEEEECCHHHCCHHHHHHHHHHHHHHHHHHH
RLGRNRIEVHYGLMAKSSDGEKG
HCCCCEEEEEEEEEEECCCCCCC
>Mature Secondary Structure
MKVLPRVLLGLVAVTIVTVLLYWQFGSAKRVLIEPQHYAYFTTNDQTAGGTSTSALSLNG
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEEEECCCCCCCCCCCEEEEECC
NTAKVDCELNASRYAWPYCGISIHLNPDPQRGLDLSDIHTIRLNVDLQGPAAEPAAMRLY
CEEEEEEEECCCCEECCEEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHH
LRNFNPIYSQLDDEYTHKYNGLEFVPGVGKGVIDIPIRSLQVMTWWLVDNRIAIEHSAPE
HHCCCHHHHHCCHHHHHHCCCEEECCCCCCCEEECCCHHEEEEEEEEECCEEEEEECCCC
FSNVNKIEFATGSASPLGQYQLTVHQVELIGDYVAGEKLFLAMLIMWAVAGAWLSALEIR
CCCCCEEEEECCCCCCCCCEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
RNRREVLRARMRQEHLQRLNHSLHEQNIKFVEMAHRDALTGAINRHGIRDWLQDQARLVR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WQLNHVSVLFIDIDYFKQVNDVYGHSLGDDLLREFALVISREIRESDKLVRWGGEEFVVF
EEECCEEEEEEEHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCEEEEE
CAQTTLEQAIELAERLRAKIADHSWIHGGAITCSLGIAQMGDERITETVSRADEALYRAK
EHHHHHHHHHHHHHHHHHHHCCCCEECCCEEEEECCHHHCCHHHHHHHHHHHHHHHHHHH
RLGRNRIEVHYGLMAKSSDGEKG
HCCCCEEEEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]