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The map label for this gene is ygiP [C]

Identifier: 147674306

GI number: 147674306

Start: 1661624

End: 1662571

Strand: Reverse

Name: ygiP [C]

Synonym: VC0395_A1542

Alternate gene names: 147674306

Gene position: 1662571-1661624 (Counterclockwise)

Preceding gene: 147673674

Following gene: 147674938

Centisome position: 54.98

GC content: 50.32

Gene sequence:

>948_bases
TTGTTTGCTGAACGCGCGAGCCAAATGGCTTTATTTGCGGTGTTAATCCAACATCAAAGTTTTACTGCTGCTGCGCACGC
GCTAGGCGTGTCGGTGTCTCATGTCAGTAAACAGCTCGCCGCGTTAGAGGCCTCGCTGGGCGTTAAACTGGTGCAGCGCA
CCACGCGCAGCTTTACTCTGACGGATGCTGGGAATCTGTTTTATGCCCAGTGCCGTGAACTTTTAACGATTGTGACCAAT
GCACAAAGTGAAATGGAAGATCAGCGTGATGAAGTGGTAGGGCTGATTAGACTTGGTTTATCGCAATCTTTTGGCACCTT
GCATGTGTTGCCTGCTTTGGAGCAGCTTCGCCAACAATATCCTGAGTTGAACGTCGAAGTGCATCTGTTTGATCATAAAG
TCGATATGCTCAAGGAAGGGTTGGATTTATGGATCACCAGTAACGAGCAGCTACCAGAGGGTTATGTGGCGCAGCGCATT
GCCGATTGCCGTTTTGTGGTGGCCGCATCGCCAGACTACCTGCTGCGTTATGGATCACCCACAGAACCTATGGCCTTAAT
GGAGCATAACTGCTTGATTTATCGAAGCTGGGAGCGCGATTACACCCGTTGGTCATTCAGCCGAGATGGACACAATCAAA
CCATTAAAGTGGCCGGAAACTACTCGGTCGATCTGGCGGAGGCGGTACGCGATGCTGCCGTGGCAGGATGGGGAATCGCT
TATTTGGCGACCTATTTGCTGCGAGATGAATTTCGCACAGGGCAGCTTATTCAGCTGCTGCCGGAGTGGTCCGCCAATCA
ACAGATGCCGTTTTATGCGGTGTATCCCAGTCGTCAACATATGCCGAAAAAAACATCGGCGGTGATTGAATTTATCAAAC
AGCGGCTCGGTACGCCTTGTTACTGGGATACTCGTTTACAACCTTATGTTCGTTTTGCAGCAGAATAG

Upstream 100 bases:

>100_bases
TTTTTCTGTTTGTGAGCAACGGGTTTTTAGGCATTTCGGTAATCGGGATGTGTTGATGAAGAAGGCTGTGATGGGGAGAG
TTTGCTGATGGAGATGCGAT

Downstream 100 bases:

>100_bases
CTTCTGGCGACTTAACGCCGTAGCCGTGTGGATCATGTTTGCTCTCCTTAATGACGCCGCCTTTCGATACTCGGTGAGAT
TAGCTCACTGGCTTGCTAGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MFAERASQMALFAVLIQHQSFTAAAHALGVSVSHVSKQLAALEASLGVKLVQRTTRSFTLTDAGNLFYAQCRELLTIVTN
AQSEMEDQRDEVVGLIRLGLSQSFGTLHVLPALEQLRQQYPELNVEVHLFDHKVDMLKEGLDLWITSNEQLPEGYVAQRI
ADCRFVVAASPDYLLRYGSPTEPMALMEHNCLIYRSWERDYTRWSFSRDGHNQTIKVAGNYSVDLAEAVRDAAVAGWGIA
YLATYLLRDEFRTGQLIQLLPEWSANQQMPFYAVYPSRQHMPKKTSAVIEFIKQRLGTPCYWDTRLQPYVRFAAE

Sequences:

>Translated_315_residues
MFAERASQMALFAVLIQHQSFTAAAHALGVSVSHVSKQLAALEASLGVKLVQRTTRSFTLTDAGNLFYAQCRELLTIVTN
AQSEMEDQRDEVVGLIRLGLSQSFGTLHVLPALEQLRQQYPELNVEVHLFDHKVDMLKEGLDLWITSNEQLPEGYVAQRI
ADCRFVVAASPDYLLRYGSPTEPMALMEHNCLIYRSWERDYTRWSFSRDGHNQTIKVAGNYSVDLAEAVRDAAVAGWGIA
YLATYLLRDEFRTGQLIQLLPEWSANQQMPFYAVYPSRQHMPKKTSAVIEFIKQRLGTPCYWDTRLQPYVRFAAE
>Mature_315_residues
MFAERASQMALFAVLIQHQSFTAAAHALGVSVSHVSKQLAALEASLGVKLVQRTTRSFTLTDAGNLFYAQCRELLTIVTN
AQSEMEDQRDEVVGLIRLGLSQSFGTLHVLPALEQLRQQYPELNVEVHLFDHKVDMLKEGLDLWITSNEQLPEGYVAQRI
ADCRFVVAASPDYLLRYGSPTEPMALMEHNCLIYRSWERDYTRWSFSRDGHNQTIKVAGNYSVDLAEAVRDAAVAGWGIA
YLATYLLRDEFRTGQLIQLLPEWSANQQMPFYAVYPSRQHMPKKTSAVIEFIKQRLGTPCYWDTRLQPYVRFAAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789440, Length=300, Percent_Identity=31, Blast_Score=164, Evalue=7e-42,
Organism=Escherichia coli, GI1787128, Length=288, Percent_Identity=30.2083333333333, Blast_Score=146, Evalue=1e-36,
Organism=Escherichia coli, GI87081978, Length=288, Percent_Identity=30.9027777777778, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1786401, Length=294, Percent_Identity=27.5510204081633, Blast_Score=136, Evalue=2e-33,
Organism=Escherichia coli, GI1789639, Length=287, Percent_Identity=31.0104529616725, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI145693193, Length=291, Percent_Identity=27.1477663230241, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1787589, Length=296, Percent_Identity=26.0135135135135, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1789173, Length=249, Percent_Identity=25.7028112449799, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1788706, Length=297, Percent_Identity=23.5690235690236, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1790783, Length=258, Percent_Identity=27.5193798449612, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1790011, Length=295, Percent_Identity=22.7118644067797, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI157672245, Length=137, Percent_Identity=31.3868613138686, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35799; Mature: 35799

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFAERASQMALFAVLIQHQSFTAAAHALGVSVSHVSKQLAALEASLGVKLVQRTTRSFTL
CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE
TDAGNLFYAQCRELLTIVTNAQSEMEDQRDEVVGLIRLGLSQSFGTLHVLPALEQLRQQY
ECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHC
PELNVEVHLFDHKVDMLKEGLDLWITSNEQLPEGYVAQRIADCRFVVAASPDYLLRYGSP
CCCCEEEEEECCHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCEEEEECCCCCEEECCCC
TEPMALMEHNCLIYRSWERDYTRWSFSRDGHNQTIKVAGNYSVDLAEAVRDAAVAGWGIA
CCCHHHHHCCEEEEECCCCCCCEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCHHHH
YLATYLLRDEFRTGQLIQLLPEWSANQQMPFYAVYPSRQHMPKKTSAVIEFIKQRLGTPC
HHHHHHHHHCCCCCHHHHHCCCCCCCCCCCEEEECCCHHCCCHHHHHHHHHHHHHCCCCC
YWDTRLQPYVRFAAE
EECCCCCHHHHCCCC
>Mature Secondary Structure
MFAERASQMALFAVLIQHQSFTAAAHALGVSVSHVSKQLAALEASLGVKLVQRTTRSFTL
CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE
TDAGNLFYAQCRELLTIVTNAQSEMEDQRDEVVGLIRLGLSQSFGTLHVLPALEQLRQQY
ECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHC
PELNVEVHLFDHKVDMLKEGLDLWITSNEQLPEGYVAQRIADCRFVVAASPDYLLRYGSP
CCCCEEEEEECCHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCEEEEECCCCCEEECCCC
TEPMALMEHNCLIYRSWERDYTRWSFSRDGHNQTIKVAGNYSVDLAEAVRDAAVAGWGIA
CCCHHHHHCCEEEEECCCCCCCEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCHHHH
YLATYLLRDEFRTGQLIQLLPEWSANQQMPFYAVYPSRQHMPKKTSAVIEFIKQRLGTPC
HHHHHHHHHCCCCCHHHHHCCCCCCCCCCCEEEECCCHHCCCHHHHHHHHHHHHHCCCCC
YWDTRLQPYVRFAAE
EECCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]